Rice Science ›› 2023, Vol. 30 ›› Issue (4): 348-358.DOI: 10.1016/j.rsci.2023.02.003
• • 上一篇
收稿日期:2022-11-08
接受日期:2023-02-23
出版日期:2023-07-28
发布日期:2023-05-26
. [J]. Rice Science, 2023, 30(4): 348-358.
Fig. 1. Typical structures of arbuscular mycorrhizal fungi (AMF) in rice roots and their colonization levels. A, Typical structures of AMF in rice roots: extra- and intra-radical hyphae (a), hyphopodia (b) and arbuscules (c). Scale bars are 80 μm. B, AMF colonization levels in six rice cultivars. Data are Mean ± SD (n = 4).
Fig. 2. Arbuscular mycorrhizal virtual taxa abundance. A, Overall count. B, Relative compartment abundance (soil and root). Operational taxonomic units with less than 50 reads were merged as ‘Other’.
| Virtual taxa | No. of OTUs | MaarjAM taxonomy a | Current taxonomy b | Abundance | Relative frequency (%) |
|---|---|---|---|---|---|
| VTX00065 | 3 | Glomus | Funneliformis | 2 162 | 35.06 |
| VTX00225 | 4 | Claroideoglomus | Claroideoglomus | 1 056 | 17.12 |
| VTX00143 | 2 | Glomus | Glomus sensu lato | 1 040 | 16.86 |
| VTX00193 | 3 | Claroideoglomus | Claroideoglomus | 556 | 9.02 |
| VTX00054 | 3 | Diversispora | Diversispora | 362 | 5.87 |
| VTX00093 | 1 | Glomus | Glomus sensu lato | 335 | 5.43 |
| VTX00069 | 3 | Glomus | Sclerocystis | 259 | 4.20 |
| VTX00067 | 2 | Glomus | Funneliformis | 190 | 3.08 |
| VTX00281 | 1 | Paraglomus | Paraglomus | 79 | 1.28 |
| VTX00005 | 3 | Archaeospora | Archaeosporales | 33 | 0.54 |
| VTX00418 | 2 | Glomus | Glomus sensu lato | 33 | 0.54 |
| VTX00114 | 1 | Glomus | Rhizoglomus | 25 | 0.41 |
| VTX00380 | 1 | Diversispora | Diversispora | 17 | 0.28 |
| VTX00004 | 2 | Archaeospora | Archaeospora | 11 | 0.18 |
| VTX00278 | 1 | Claroideoglomus | Claroideoglomus | 8 | 0.13 |
| VTX00280 | 1 | Glomus | Rhizoglomus | 1 | 0.02 |
Table 1. Virtual taxa (VT) identified in Vercelli (Italy) rice fields under alternate wetting and drying management.
| Virtual taxa | No. of OTUs | MaarjAM taxonomy a | Current taxonomy b | Abundance | Relative frequency (%) |
|---|---|---|---|---|---|
| VTX00065 | 3 | Glomus | Funneliformis | 2 162 | 35.06 |
| VTX00225 | 4 | Claroideoglomus | Claroideoglomus | 1 056 | 17.12 |
| VTX00143 | 2 | Glomus | Glomus sensu lato | 1 040 | 16.86 |
| VTX00193 | 3 | Claroideoglomus | Claroideoglomus | 556 | 9.02 |
| VTX00054 | 3 | Diversispora | Diversispora | 362 | 5.87 |
| VTX00093 | 1 | Glomus | Glomus sensu lato | 335 | 5.43 |
| VTX00069 | 3 | Glomus | Sclerocystis | 259 | 4.20 |
| VTX00067 | 2 | Glomus | Funneliformis | 190 | 3.08 |
| VTX00281 | 1 | Paraglomus | Paraglomus | 79 | 1.28 |
| VTX00005 | 3 | Archaeospora | Archaeosporales | 33 | 0.54 |
| VTX00418 | 2 | Glomus | Glomus sensu lato | 33 | 0.54 |
| VTX00114 | 1 | Glomus | Rhizoglomus | 25 | 0.41 |
| VTX00380 | 1 | Diversispora | Diversispora | 17 | 0.28 |
| VTX00004 | 2 | Archaeospora | Archaeospora | 11 | 0.18 |
| VTX00278 | 1 | Claroideoglomus | Claroideoglomus | 8 | 0.13 |
| VTX00280 | 1 | Glomus | Rhizoglomus | 1 | 0.02 |
Fig. 3. Heatmap of presence/absence of arbuscular mycorrhizal fungus taxa retrieved from six rice cultivars. Main tree nodes with related phylogenetic assignment (in brackets) are reported. RFLP, Restriction fragment length polymorphism.
| Rice cultivar | Shannon diversity index (H) | Shannon equitability index (E) |
|---|---|---|
| Centauro | 0.56 | 0.81 |
| JSendra | 1.65 | 0.84 |
| Loto | 1.36 | 0.85 |
| Puntal | 0.83 | 0.60 |
| Selenio | 1.58 | 0.88 |
| Vialone nano | 1.09 | 0.56 |
Table 2. Arbuscular mycorrhizal fungus diversity (H) and equitability (E) in six rice cultivars.
| Rice cultivar | Shannon diversity index (H) | Shannon equitability index (E) |
|---|---|---|
| Centauro | 0.56 | 0.81 |
| JSendra | 1.65 | 0.84 |
| Loto | 1.36 | 0.85 |
| Puntal | 0.83 | 0.60 |
| Selenio | 1.58 | 0.88 |
| Vialone nano | 1.09 | 0.56 |
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