Genome-Wide Dissection of Quan 9311A Breeding Process and Application Advantages

doi:10.1016/j.rsci.2023.06.004

摘要/Abstract

. [J]. Rice Science, 2023, 30(6): 552-565.

图/表 7

参考文献 44

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Trait	Chromosome	Gene	Alteration allele caused function ^a	93-11	Zhong 9A	Quan 9311A	WSSM	QYSM
HD	1	OsMADS51	Delaying HD	√	○	√	√	√
YC	2	Rf2	Fertility restoration	√	○	√	√	√
TQ	6	SSG6/OsACS6	Controls starch grain size	√	○	√	√	√
TQ	6	Waxy/GBSSI	Changing amylose content	√	○	√	√	√
HD	6	Hd1	Promoting HD under long days	√	○	√	○	√○
YC	6	DLT/GS6	Dwarf and low-tillering	√	○	√	○	√○
YC	7	BG2/GE	Increasing grain size	√	○	√	○	√○
OT	7	Sdr4	Controlling seed dormancy	√	○	√	○	√○
YC	8	GW8/OsSPL16	Increasing grain width	√	○	√	√	√
ABS	9	Sub1A	Submergence tolerance	√	○	√	√	√
BS	11	STV11	Increasing resistance to rice stripe virus	√	○	√	√	√
PA	1	D2/SMG11	Decreasing plant height	○	√	√	○	√○
YC	1	Rf3/OsMADS3	Fertility restoration	○	√	√	√	√
OT	3	BOC1	Callus browning	○	√	√	○	√○
BS	4	Xa1	Increasing blight resistance	○	√	√	○	√○
HD	7	Ghd7/Hd4	Promoting HD under long days	○	√	√	○	√○
BS	11	Xa3/Xa26	Increasing blight resistance	○	√	√	○	√○
YC	1	NOG1	Increasing grain number	√	√	○	√	√○
YC	1	LAX1	Increasing grain number	√	√	√	○	√○
BS	4	Pi21	Increasing blast resistance	○	√	○	√	√○
BS	4	Bph3	Increasing brown planthopper resistance	√	○	○	√	√○
YC	5	PTB1	Increasing seed-setting rate	√	○	○	√	√○
YC	5	GW5/GSE5	Increasing grain width	○	○	√	○	√○
BS	6	Bph29	Increasing brown planthopper resistance	√	○	○	√	√○
BS	6	Pi9	Increasing blast resistance	○	○	○	√○	√○
HD	7	Ghd7.1	Promoting HD under long days	√	√	√	○	√○
YC	8	Ghd8	Promoting HD under long days	○	○	○	√	√○
PA	8	TIG1	Smaller tiller angle	√	√	√	○	√○
BS	9	Pi5	Increasing blast resistance	○	○	○	√	√○
BS	9	Pi56	Increasing blast resistance	○	○	○	√	√○
YC	10	Rf4	Fertility restoration	○	○	○	√	√○
YC	10	Rf1b	Fertility restoration	○	○	○	√	√○
BS	11	Pi-ta	Increasing blast resistance	○	○	○	√	√○

Trait	Chromosome	Gene	Alteration allele caused function ^a	93-11	Zhong 9A	Quan 9311A	WSSM	QYSM
HD	1	OsMADS51	Delaying HD	√	○	√	√	√
YC	2	Rf2	Fertility restoration	√	○	√	√	√
TQ	6	SSG6/OsACS6	Controls starch grain size	√	○	√	√	√
TQ	6	Waxy/GBSSI	Changing amylose content	√	○	√	√	√
HD	6	Hd1	Promoting HD under long days	√	○	√	○	√○
YC	6	DLT/GS6	Dwarf and low-tillering	√	○	√	○	√○
YC	7	BG2/GE	Increasing grain size	√	○	√	○	√○
OT	7	Sdr4	Controlling seed dormancy	√	○	√	○	√○
YC	8	GW8/OsSPL16	Increasing grain width	√	○	√	√	√
ABS	9	Sub1A	Submergence tolerance	√	○	√	√	√
BS	11	STV11	Increasing resistance to rice stripe virus	√	○	√	√	√
PA	1	D2/SMG11	Decreasing plant height	○	√	√	○	√○
YC	1	Rf3/OsMADS3	Fertility restoration	○	√	√	√	√
OT	3	BOC1	Callus browning	○	√	√	○	√○
BS	4	Xa1	Increasing blight resistance	○	√	√	○	√○
HD	7	Ghd7/Hd4	Promoting HD under long days	○	√	√	○	√○
BS	11	Xa3/Xa26	Increasing blight resistance	○	√	√	○	√○
YC	1	NOG1	Increasing grain number	√	√	○	√	√○
YC	1	LAX1	Increasing grain number	√	√	√	○	√○
BS	4	Pi21	Increasing blast resistance	○	√	○	√	√○
BS	4	Bph3	Increasing brown planthopper resistance	√	○	○	√	√○
YC	5	PTB1	Increasing seed-setting rate	√	○	○	√	√○
YC	5	GW5/GSE5	Increasing grain width	○	○	√	○	√○
BS	6	Bph29	Increasing brown planthopper resistance	√	○	○	√	√○
BS	6	Pi9	Increasing blast resistance	○	○	○	√○	√○
HD	7	Ghd7.1	Promoting HD under long days	√	√	√	○	√○
YC	8	Ghd8	Promoting HD under long days	○	○	○	√	√○
PA	8	TIG1	Smaller tiller angle	√	√	√	○	√○
BS	9	Pi5	Increasing blast resistance	○	○	○	√	√○
BS	9	Pi56	Increasing blast resistance	○	○	○	√	√○
YC	10	Rf4	Fertility restoration	○	○	○	√	√○
YC	10	Rf1b	Fertility restoration	○	○	○	√	√○
BS	11	Pi-ta	Increasing blast resistance	○	○	○	√	√○

Ecological growing region	Cultivar	Plot yield (kg)	Blast resistance	Bacterial blight resistance	White backed planthopper resistance	Brown planthopper resistance	Grain quality
Early-season indica in South China	Quanyousimiao	10.77 ± 0.29	3.8	7	7	/	II
Early-season indica in South China	Tianyouhuazhan	10.49 ± 0.12	4.1	7	7	/	NO
Late-season indica in South China	Quanyousimiao	9.35 ± 0.19*	3.3*	7	9	/	II
Late-season indica in South China	Boyou 998	8.95 ± 0.10	7.1	7	9	/	NO
Mid-season indica in the upper reaches of the Yangtze River	Quanyousimiao	12.75 ± 0.15	3.3*	/	/	7	II
	F-You 498	12.55 ± 0.24	8.2	/	/	9	NO
Mid-season indica in the middle and lower reaches of the Yangtze River	Quanyousimiao	12.71 ± 0.04***	3.1***	5	/	7	III
	Fengliangyou 4	11.75 ± 0.15	7.2	9	/	9	NO

Ecological growing region	Cultivar	Plot yield (kg)	Blast resistance	Bacterial blight resistance	White backed planthopper resistance	Brown planthopper resistance	Grain quality
Early-season indica in South China	Quanyousimiao	10.77 ± 0.29	3.8	7	7	/	II
Early-season indica in South China	Tianyouhuazhan	10.49 ± 0.12	4.1	7	7	/	NO
Late-season indica in South China	Quanyousimiao	9.35 ± 0.19*	3.3*	7	9	/	II
Late-season indica in South China	Boyou 998	8.95 ± 0.10	7.1	7	9	/	NO
Mid-season indica in the upper reaches of the Yangtze River	Quanyousimiao	12.75 ± 0.15	3.3*	/	/	7	II
	F-You 498	12.55 ± 0.24	8.2	/	/	9	NO
Mid-season indica in the middle and lower reaches of the Yangtze River	Quanyousimiao	12.71 ± 0.04***	3.1***	5	/	7	III
	Fengliangyou 4	11.75 ± 0.15	7.2	9	/	9	NO

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