Rice Science ›› 2026, Vol. 33 ›› Issue (2): 186-202.DOI: 10.1016/j.rsci.2026.01.001
收稿日期:2025-06-26
接受日期:2025-12-12
出版日期:2026-03-28
发布日期:2026-04-01
. [J]. Rice Science, 2026, 33(2): 186-202.
| SUB/AG | Gene | Location (bp) | Note | Reference |
|---|---|---|---|---|
| AG | OsmiR393a | Chr. 01: 2 309 149-2 309 263 | MicroRNA393a | Guo et al, |
| AG | OsMYBS1 | Chr. 01: 18 755 268-18 756 900 | MYB family transcription factor | Hong et al, |
| AG | OsCBL10 | Chr. 01: 29 568 547-29 571 484 | CBL protein 10 | Ye et al, |
| AG | OsHXK6 | Chr. 01: 31 009 006-31 014 001 | Hexokinase gene | Hsu and Tung, |
| AG | OsCNL1 | Chr. 03: 1 706 051-1 708 336 | Peroxisomal cinnamate:CoA ligase 1 | Wang et al, |
| AG | OsEBP89 | Chr. 03: 4 343 725-4 345 716 | EREBP transcription factor | Zhang et al, |
| AG | Osa-miR167b | Chr. 03: 30 546 928-30 547 090 | MicroRNA167b | Lee et al, |
| AG | OsSnRK1A, OsSnRK1αA, OSK1 | Chr. 05: 26 346 997-26 351 611 | Sucrose non-fermenting-1 related protein kinase 1 | Lu et al, |
| AG | OsFLZ18 | Chr. 06: 1 361 364-1 362 509 | FLZ protein | Zhang et al, |
| AG | OsGH3.8, OsGH3-8, OsMGH3 | Chr. 07: 24 149 649-24 152 079 | Indole-3-acetic acid-amido (IAA) synthetase, IAA inactivation‐related gene | Jain et al, |
| AG | OsCLSY1 | Chr. 07: 29 465 173-29 475 499 | CLASSY1 | Castano-Duque et al, |
| AG | RAmy3D, AmyII-4, OsAmy3D | Chr. 08: 23 340 676-23 343 533 | Alpha-amylase isozyme 3D | Kumar et al, |
| AG | OsTPP7 | Chr. 09: 12 251 875-12 254 087 | Trehalose-6-phosphate phosphatase | Kretzschmar et al, |
| AG | OsbZIP72 | Chr. 09: 17 189 976-17 194 013 | bZIP transcription factor | Wang et al, |
| AG | OsCNL2 | Chr. 09: 22 082 637-22 084 897 | Peroxisomal cinnamate:CoA ligase 2 | Wang et al, |
| AG | OsMYBS2 | Chr. 10: 22 174 581-22 176 688 | MYB family transcription factor | Chen et al, |
| AG | OsCIPK15 | Chr. 11: 630 580-633 695 | CBL-interacting protein kinase 15 | Lee et al, |
| AG | ADH1 | Chr. 11: 5 712 641-5 716 288 | Alcohol dehydrogenase gene | Saika et al, |
| AG | OsUGT75A | Chr. 11: 14 848 226-14 849 740 | UDP-glucosyltransferase | He et al, |
| AG | OsGF14h | Chr. 11: 23 553 560-23 558 464 | 14-3-3/GF14 protein | Sun et al, |
| SUB | OsACS5 | Chr. 01: 5 002 118-5 005 727 | Aminocyclopropane-1-carboxylate synthase | Zhou et al, |
| SUB | SLRL1 | Chr. 01: 26 044 166-26 045 843 | GRAS-domain protein, SLR1 like-1 | Fukao and Bailey-Serres, |
| SUB | sd1, OsGA20ox2 | Chr. 01: 38 382 382-38 385 504 | DGWG dwarf, semidwarf-1, and gibberellin 20-oxidase gene | Kuroha et al, |
| SUB | CDPK5 | Chr. 02: 28 086 381-28 092 152 | Group I calcium-dependent protein kinase | Yamauchi et al, |
| SUB | OsABA8ox1, CYP707A5 | Chr. 02: 28 995 717-28 998 581 | ABA 8′-hydroxylas | Yang and Choi, Saika et al, |
| SUB | OsMAPK3 | Chr. 03: 9 847 700-9 850 473 | Mitogen-activated protein | Singh and Sinha, |
| SUB | OsEIL1, OsEIL1a | Chr. 03: 11 771 261-11 773 192 | Ethylene-insensitive | Kurokawa et al, |
| SUB | OsERF66 | Chr. 03: 12 713 329-12 714 584 | Group VII ethylene response factor | Lin et al, |
| SUB | OsERS1 | Chr. 03: 28 169 807-28 174 250 | Ethylene responsive sensor 1 | Yu et al, |
| SUB | OsETR2 | Chr. 04: 4 738 375-4 742 348 | Ethylene responsive sensor 2 | Yu et al, |
| SUB | OsCDPK13, OsCPK13, OsCDPK7 | Chr. 04: 29 531 223-29 536 492 | Calcium-dependent protein kinase | Yamauchi et al, |
| SUB | OsHIGD2 | Chr. 07: 28 484 045-28 485 201 | Oryza sativa HIGD | Hwang and Choi, |
| SUB | OsERF67 | Chr. 07: 28 540 697-28 541 796 | Group VII ethylene response factor | Lin et al, |
| SUB | Sub1 | Chr. 09: 6 387 891-6 389 789 | Submergence 1 | Xu et al, |
| SUB | OsGGT | Chr. 10: 21 798 920-21 802 986 | Submergence-induced gene, homologous to glycogenin glucosyltransferase | Qi et al, |
| SUB | OsHSD1, DRP7, LGF1 | Chr. 11: 17 785 138-17 792 672 | Hydroxysteroid dehydrogenase, leaf gas film 1, and dripping wet leaf 7 | Kurokawa et al, |
| SUB | OsrbohH, Osrboh9 | Chr. 12: 21 648 123-21 653 570 | NADPH oxidase, respiratory burst oxidase homolog | Yamauchi et al, |
| SUB | SNORKEL1 | Chr. 12: 24 966 354-26 108 004 | Ethylene response factor | Hattori et al, |
Table 1. Details of physiological and molecularly regulated genes involved in anaerobic germination (AG) and submergence (SUB) stresses.
| SUB/AG | Gene | Location (bp) | Note | Reference |
|---|---|---|---|---|
| AG | OsmiR393a | Chr. 01: 2 309 149-2 309 263 | MicroRNA393a | Guo et al, |
| AG | OsMYBS1 | Chr. 01: 18 755 268-18 756 900 | MYB family transcription factor | Hong et al, |
| AG | OsCBL10 | Chr. 01: 29 568 547-29 571 484 | CBL protein 10 | Ye et al, |
| AG | OsHXK6 | Chr. 01: 31 009 006-31 014 001 | Hexokinase gene | Hsu and Tung, |
| AG | OsCNL1 | Chr. 03: 1 706 051-1 708 336 | Peroxisomal cinnamate:CoA ligase 1 | Wang et al, |
| AG | OsEBP89 | Chr. 03: 4 343 725-4 345 716 | EREBP transcription factor | Zhang et al, |
| AG | Osa-miR167b | Chr. 03: 30 546 928-30 547 090 | MicroRNA167b | Lee et al, |
| AG | OsSnRK1A, OsSnRK1αA, OSK1 | Chr. 05: 26 346 997-26 351 611 | Sucrose non-fermenting-1 related protein kinase 1 | Lu et al, |
| AG | OsFLZ18 | Chr. 06: 1 361 364-1 362 509 | FLZ protein | Zhang et al, |
| AG | OsGH3.8, OsGH3-8, OsMGH3 | Chr. 07: 24 149 649-24 152 079 | Indole-3-acetic acid-amido (IAA) synthetase, IAA inactivation‐related gene | Jain et al, |
| AG | OsCLSY1 | Chr. 07: 29 465 173-29 475 499 | CLASSY1 | Castano-Duque et al, |
| AG | RAmy3D, AmyII-4, OsAmy3D | Chr. 08: 23 340 676-23 343 533 | Alpha-amylase isozyme 3D | Kumar et al, |
| AG | OsTPP7 | Chr. 09: 12 251 875-12 254 087 | Trehalose-6-phosphate phosphatase | Kretzschmar et al, |
| AG | OsbZIP72 | Chr. 09: 17 189 976-17 194 013 | bZIP transcription factor | Wang et al, |
| AG | OsCNL2 | Chr. 09: 22 082 637-22 084 897 | Peroxisomal cinnamate:CoA ligase 2 | Wang et al, |
| AG | OsMYBS2 | Chr. 10: 22 174 581-22 176 688 | MYB family transcription factor | Chen et al, |
| AG | OsCIPK15 | Chr. 11: 630 580-633 695 | CBL-interacting protein kinase 15 | Lee et al, |
| AG | ADH1 | Chr. 11: 5 712 641-5 716 288 | Alcohol dehydrogenase gene | Saika et al, |
| AG | OsUGT75A | Chr. 11: 14 848 226-14 849 740 | UDP-glucosyltransferase | He et al, |
| AG | OsGF14h | Chr. 11: 23 553 560-23 558 464 | 14-3-3/GF14 protein | Sun et al, |
| SUB | OsACS5 | Chr. 01: 5 002 118-5 005 727 | Aminocyclopropane-1-carboxylate synthase | Zhou et al, |
| SUB | SLRL1 | Chr. 01: 26 044 166-26 045 843 | GRAS-domain protein, SLR1 like-1 | Fukao and Bailey-Serres, |
| SUB | sd1, OsGA20ox2 | Chr. 01: 38 382 382-38 385 504 | DGWG dwarf, semidwarf-1, and gibberellin 20-oxidase gene | Kuroha et al, |
| SUB | CDPK5 | Chr. 02: 28 086 381-28 092 152 | Group I calcium-dependent protein kinase | Yamauchi et al, |
| SUB | OsABA8ox1, CYP707A5 | Chr. 02: 28 995 717-28 998 581 | ABA 8′-hydroxylas | Yang and Choi, Saika et al, |
| SUB | OsMAPK3 | Chr. 03: 9 847 700-9 850 473 | Mitogen-activated protein | Singh and Sinha, |
| SUB | OsEIL1, OsEIL1a | Chr. 03: 11 771 261-11 773 192 | Ethylene-insensitive | Kurokawa et al, |
| SUB | OsERF66 | Chr. 03: 12 713 329-12 714 584 | Group VII ethylene response factor | Lin et al, |
| SUB | OsERS1 | Chr. 03: 28 169 807-28 174 250 | Ethylene responsive sensor 1 | Yu et al, |
| SUB | OsETR2 | Chr. 04: 4 738 375-4 742 348 | Ethylene responsive sensor 2 | Yu et al, |
| SUB | OsCDPK13, OsCPK13, OsCDPK7 | Chr. 04: 29 531 223-29 536 492 | Calcium-dependent protein kinase | Yamauchi et al, |
| SUB | OsHIGD2 | Chr. 07: 28 484 045-28 485 201 | Oryza sativa HIGD | Hwang and Choi, |
| SUB | OsERF67 | Chr. 07: 28 540 697-28 541 796 | Group VII ethylene response factor | Lin et al, |
| SUB | Sub1 | Chr. 09: 6 387 891-6 389 789 | Submergence 1 | Xu et al, |
| SUB | OsGGT | Chr. 10: 21 798 920-21 802 986 | Submergence-induced gene, homologous to glycogenin glucosyltransferase | Qi et al, |
| SUB | OsHSD1, DRP7, LGF1 | Chr. 11: 17 785 138-17 792 672 | Hydroxysteroid dehydrogenase, leaf gas film 1, and dripping wet leaf 7 | Kurokawa et al, |
| SUB | OsrbohH, Osrboh9 | Chr. 12: 21 648 123-21 653 570 | NADPH oxidase, respiratory burst oxidase homolog | Yamauchi et al, |
| SUB | SNORKEL1 | Chr. 12: 24 966 354-26 108 004 | Ethylene response factor | Hattori et al, |
Fig. 1. Regulatory mechanisms during the germination stage under anaerobic stress. ABA, Abscisic acid; ATP, Adenosine triphosphate; CA-CoA, Cinnamoyl-CoA; GA, Gibberellin; IAA, Indole-3-acetic acid; JA, Jasmonic acid; ROS, Reactive oxygen species; SA, Salicylic acid; T6P, Trehalose 6-phosphate; TCA, Tricarboxylic acid cycle. The solid arrows, dashed arrows, and arrowheads represent step-by-step biochemical reactions, simplified biochemical reactions, and invalid biochemical reaction, respectively. Different colored arrows represent different biochemical pathways.
Fig. 2. Morphological characteristics of germination and vegetative stage on rice under flooding. ROS, Reactive oxygen species.
Fig. 3. Morphological traits associated with submergence adaptation in rice. LGF1, Leaf gas film 1; ROL, Radial oxygen loss; PDC, Pyruvate decarboxylase; CDPK, Calcium-dependent protein kinase; ACS5, 1-Aminocyclopropane-1-carboxylate synthase 5; RBOHH, Respiratory burst oxidase homolog; AE, Aerenchyma.
Fig. 4. Genetic and molecular regulatory mechanisms underlying two survival strategies of rice under submergence. ABA, Abscisic acid; BR, Brassinosteroids; GA, Gibberellin. The solid arrows and arrowheads represent step-by-step biochemical reactions and invalid biochemical reaction, respectively. Different colored arrows represent different biochemical pathways.
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