Angaji S A. 2008. Mapping QTLs for submergence tolerance during germination in rice. Afr J Biotechn, 7: 2551–2558.
Basten C J, Weir B S, Zeng Z B. 1997. QTL Cartographer: A Reference Manual and Tutorial for QTL Mapping. Raleigh N C, USA: North Carolina State University.
Cheng H T, Hua J, Xue D W, Guo L B, Zeng D L, Zang G H, Qian Q. 2008. Mapping of QTL underlying tolerance to alkali at germination and early seedling stages in rice. Acta Agron Sin, 34: 1719–1727.
Churchill G A, Doerge R W. 1994. Empirical threshold values for quantitative trait mapping. Genetics, 138(1): 963–971.
Dey M M, Upadhyaya H K. 1996. Yield loss due to drought, cold and submergence in Asia. In: Evenson R E, Herdt R W, Hossain M. Rice Research in Asia: Progress and Priorities. Wallingford, UK: CAB International: 291–303.
Foolad M R, Lin G Y, Chen F Q. 1996. Comparison of QTLs for seed germination under non-stress, cold stress and salt stress in tomato. Plant Breeding, 118: 167–173.
Fujino K, Sekiguchi H, Sato T, Kiuchi H, Nonoue Y, Takeuchi Y, Ando T, Lin S Y, Yano M. 2004. Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.). Theor Appl Genet, 108: 794–799.
Gong J M, Zheng X W, Du B X, Qian Q, Chen S Y, Zhu L H, He P. 2001. Comparative study of QTLs for agronomic traits of rice (Oriza sativa L.) between salt stress and nonstress. Sci China: Life Sci, 44: 73–82.
Han L Z, Zhang Y Y, Qiao Y L, Cao G L, Zhang S Y, Kim J H, Koh H J. 2006. Genetic and QTL analysis for low-temperature vigor of germination in rice. Acta Genet Sin, 33: 998–1006.
Hayashi E, Aoyama N, Still D W. 2008. Quantitative trait loci associated with lettuce seed germination under different temperature and light environments. Genome, 51: 928–947.
Hu S P, Yang H, Zou G H, Liu H Y, Liu G L, Mei H W, Run C, Li M S, Luo L J. 2007. Relationship between coleoptile length and drought resistance and their QTL mapping in rice. Rice Sci, 14(1): 13–20.
Ikeda T, Ohnishi S, Senda M, Miyoshi T, Ishimoto M, Kitamura K, Funatsuki H. 2009. A novel major quantitative trait locus controlling seed development at low temperature in soybean (Glycine max). Theor Appl Genet, 118: 1477–1488.
Ji S L, Jiang L, Wang Y H, Zhang W W, Liu X L, Liu S J, Liu S J, Chen L M, Zhai H Q, Wan J M. 2009. Quantitative trait loci mapping and stability for low temperature germination ability of rice. Plant Breeding, 128: 387–392.
Kamoshita A, Zhang J X, Siopongco J, Sakarung S, Nguyen H T, Wade L J. 2002. Effects of phenotyping environment on identification of quantitative trait loci for rice root morphology under anaerobic conditions. Crop Sci, 42(1): 255–265.
Lafitte H R, Courtois B, Arraudeau M. 2002. Genetic improvement of rice in aerobic systems: Progress from yield to genes. Field Crops Res, 75: 171–190.
Lanceras J C, Pantuwan G, Jongdee B, Toojinda T. 2004. Quantitative trait loci associated with drought tolerance at reproductive stage in rice. Plant Physiol, 135: 384–399.
Liang C, Lou Q J, Sun Z X, Xing Y Z, Yu X Q, Luo L J. 2006. QTL mapping of low temperature on germination rate of rice. Rice Sci, 13(2): 93–98.
MacMillan K, Emrich K, Piepho H P, Mullins C E, Price A H. 2006. Assessing the importance of genotype × environment interaction for root traits in rice using a mapping population: II. Conventional QTL analysis. Theor Appl Genet, 113(5): 953–964.
Maguire J D. 1962. Seed of germination aid in selection and evaluation for seedling emergence and vigour. Crop Sci, 2: 176–177.
Mano Y, Takeda K. 1997. Mapping quantitative trait loci for salt tolerance at germination and the seedling stage in barley (Hordeum vulgare L). Euphytica, 94: 263–272.
McCouch S R, Teytelman L, Xu Y B, Lobos K B, Clare K, Walton M, Fu B, Maghirang R, Li Z K, Xing Y Z, Zhang Q F, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res, 9: 199–207.
Miura K, Lin S Y, Araki H, Nagamine T, Kuroki M, Shimizu H, Ando L, Yano M. 2004. Genetical studies on germination of seed and seedling establishment for breeding of improved rice varieties suitable for direct seeding culture. Jpn Agric Res Quart, 38: 1–5.
Oh E, Kang H, Yamaguchi S, Park J, Lee D, Kamiya Y, Choi G. 2009. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell, 21: 403–419.
Park S J, Kwak K J, Oh T R, Kim Y O, Kang H. 2009. Cold shock domain proteins affect seed germination and growth of Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol, 50: 869–878.
Price A H, Townend J, Jones M P, Audebert A, Courtois B. 2002. Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines. Mol Biol, 48: 683–695.
Redona E D, Mackill D J. 1996. Genetic variation for seedling traits in rice. Crop Sci, 36: 285–290.
Sabouri H, Sabouri A. 2008. New evidence of QTLs attributed to salinity tolerance in rice. Afr J Biotechn, 7(24): 4376–4383.
Saghai Maroof M A, Biyashev R M, Yang G P, Zhang Q, Allard R W. 1994. Extraordinarily polymorphic microsatillate DNA in barely species diversity, choromosomal location & population dynamics. Proc Natl Acad Sci USA, 91: 5466–5470.
Sasaki K, Kazama Y, Chae Y, Sato T. 2013. Confirmation of novel quantitative trait loci for seed dormancy at different ripening stages in rice. Rice Sci, 20(3): 207–212.
Srividhya A, Vemireddy L R, Sridhar S, Jayaprada M, Ramanarao P V, Hariprasad A S, Reddy H K, Anuradha G, Siddiq E. 2011. Molecular mapping of QTLs for yield and its components under two water supply conditions in rice (Oryza sativa L.). J Crop Sci Biotechn, 14(1): 45–56.
Tanksley S D. 1993. Mapping polygenes. Ann Rev Genet, 27: 205–233.
Teng S H, Zeng D L, Qian Q, Kunihifo Y, Huang D N, Zhu L H. 2001. QTL analysis of rice low temperature germinability. Chin Sci Bull, 46(21): 1081–1083.
Vos P, Hogers R, Bleeker M, Reijans M, Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M. 1995. AFLP: A new technique for DNA fingerprinting. Nucl Acid Res, 23: 4407–4414.
Wang S, Basten C J, Zeng Z B. 2007. Windows QTL Cartographer 25. USA: Department of Statistics, North Carolina University.
Wang X S, Zhu J, Mansueto L, Bruskiewich R. 2005. Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map. J Zhejiang Univ Sci, 6: 382–388.
Wang Z F, Wang J F, Bao Y M, Wu Y Y, Zhang H S. 2011. Quantitative trait loci controlling rice seed germination under salt stress. Euphytica, 178(3): 297–307.
Wen J, Ling J, Zhang W W, Zhai H Q, Wan J M. 2008. Mapping QTL for seed dormancy in weedy rice. Acta Agron Sin, 34(5): 737–742.
Xiong L M, Wang R G, Mao G H, Koczan J M. 2006. Identification of drought tolerance determinants by genetic analysis of root response to drought stress and abscisic acid. Plant Physiol, 142(3): 1065–1074.
Yano R, Kanno Y, Jikumaru Y, Nakabayashi K, Kamiya Y, Nambara E. 2009. Chottol, a putative double Apetala2 repeat transcription factor, is involved in abscisic acid-mediated repression of gibberellin biosynthesis during seed germination in Arabidopsis. Plant Physiol, 151: 641–654.
Zhang Z H, Qu X S, Wan S, Chen L H, Zhu Y G. 2005. Comparison of QTL controlling seedling vigour under different temperature conditions using recombinant inbred lines in rice (Oryza sativa). Ann Bot, 95: 423–429.
