Ando T, Yamamoto T, Shimizu T, Ma X F, Shomura A, Takeuchi Y, Lin S Y, Yano M. 2008. Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice. Theor Appl Genet, 116(6): 881–890.
Ashikari M, Matsuoka M. 2006. Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends Plant Sci, 11(7): 344–350.
Brondani C, Rangel N, Brondani V, Ferreira E. 2002. QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers. Theor Appl Genet, 104(6/7): 1192–1203.
Chen S, Lin X H, Xu C G, Zhang Q F. 2000. Improvement of bacterial blight resistance of ‘Minghui 63’, an elite restorer line of hybrid rice, by molecular marker-assisted selection. Crop Sci, 40(1): 239–244.
Fan C C, Xing Y Z, Mao H L, Lu T T, Han B, Xu C G, Li X H, Zhang Q F. 2006. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet, 112(6): 1164–1171.
Gao Z Y, Zhao S C, He W M, Guo L B, Peng Y L, Wang J J, Guo X S, Zhang X M, Rao Y C, Zhang C, Dong G J, Zheng F Y, Lu C X, Hu J, Zhou Q, Liu H J, Wu H Y, Xu J, Ni P X, Zeng D L, Liu D H, Tian P, Gong L H, Ye C, Zhang G H, Wang J, Tian F K, Xue D W, Liao Y, Zhu L, Chen M S, Li J Y, Cheng S H, Zhang G Y, Wang J, Qian Q. 2013. Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc Natl Acad Sci USA, 110(35): 14492–14497.
Guo L B, Cheng S H, Qian Q. 2008. Progress and prospects of breeding by gene design in rice. Chin J Rice Sci, 22(6): 650–657. (in Chinese with English abstract)
Guo L B, Ma L L, Jiang H, Zeng D L, Hu J, Wu L W, Gao Z Y, Zhang G H, Qian Q. 2009. Genetic analysis and fine mapping of two genes for grain shape and weight in rice. J Integr Plant Biol, 51(1): 45–51.
Han B, Huang X H. 2013. Sequencing-based genome-wide association study in rice. Curr Opin Plant Biol, 16: 133–138.
Huang X Z, Qian Q, Liu Z B, Sun H Y, He S Y, Luo D, Xia G M, Chu C C, Li J Y, Fu X D. 2009. Natural variation at the DEP1 locus enhances grain yield in rice. Nat Genet, 41(4): 494–497.
Ikeda M, Miura K, Aya K, Kitano H, Matsuoka M. 2013. Genes offering the potential for designing yield-related traits in rice. Curr Opin Plant Biol, 16(2): 213–220.
Liu J, Tao H J, Shi S, Ye W J, Qian Q, Guo L B. 2012. Genetics and breeding improvement for panicle type in rice. Chin J Rice Sci, 26(2): 227–234. (in Chinese with English abstract)
Liu S P, Li X, Wang Z Y, Li X H, He Y Q. 2003. Gene pyramiding to increase the blast resistance in rice. Mol Plant Breeding, 1(1): 22–26. (in Chinese with English abstract)
Ma L L, Guo L B, Qian Q. 2006. Germplasm resources and genetic analysis of large grain in rice. Chin Bull Bot, 23(4): 395–401. (in Chinese with English abstract)
Miura K, Ikeda M, Matsubara A, Song X J, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M. 2010. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet, 42(6): 545–549.
Murray M G, Thompson W F. 1980. Rapid isolation of high molecular weight plant DNA. Nucl Acids Res, 8(19): 4321–4325.
Pei Q L, Wang C L, Liu P Q, Wang J, Zhao K J. 2011. Marker-assisted selection for pyramiding disease and insect resistance genes in rice. Chin J Rice Sci, 25(2): 119–129. (in Chinese with English abstract)
Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M. 2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet, 40(8): 1023–1028.
Singh S, Sidhu J S, Huang N, Vikal Y, Li Z, Brar D S, Dhaliwal H S, Khush G S. 2001. Pyramiding three bacterial blight resistance genes (Xa5, Xa13 and Xa21) using marker assisted selection into indica rice cultivar PR106. Theor Appl Genet, 102(6/7): 1011–1015.
Song X J, Huang W, Shi M, Zhu M Z, Lin H X. 2007. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet, 39(5): 623–630.
Suh J P, Jeung J U, Noh T H, Cho Y C, Park S H, Park H S, Shin M S, Kim C K, Jena K K. 2013. Development of breeding lines with three pyramided resistance genes that confer broad-spectrum bacterial blight resistance and their molecular analysis in rice. Rice, 6: 5.
Thomson M J, Tai T H, McClung A M, Lai X H, Hinga M E, Lobos K B, Xu Y, Martinez C P, McCcouch S R. 2003. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet, 107: 479–493.
Wang E T, Wang J J, Zhu X D, Hao W, Wang L Y, Li Q, Zhang L X, He W, Lu B R, Lin H X, Ma H, Zhang G Q, He Z H. 2008. Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat Genet, 40: 1370–1374.
Wang P, Xing Y Z, Li Z K, Yu S B. 2012. Improving rice yield and quality by QTL pyramiding. Mol Breeding, 29(4): 903–913.
Wang S K, Wu K, Yuan Q B, Liu X Y, Liu Z B, Lin X Y, Zeng R Z, Zhu H T, Dong G J, Qian Q, Zhang G Q, Fu X D. 2012. Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet, 44(8): 950–954.
Xing Y Z, Tan Y F, Xu C G, Hua J P, Sun X L. 2001. Mapping quantitative trait loci for grain appearance traits of rice using a recombinant inbred line population. Acta Bot Sin, 43(8): 840–845. (in Chinese with English abstract)
Xu J L, Xue Q Z, Luo L J, Li Z K. 2002. Genetic dissection of grain weight and its related traits in rice (Oryza sativa L.). Chin J Rice Sci, 16(1): 6–10. (in Chinese with English abstract)
Xue W Y, Xing Y Z, Weng X Y, Zhao Y, Tang W J, Wang L, Zhou H J, Yu S B, Xu C G, Li X H, Zhang Q F. 2008. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet, 40(6): 761–767.
Yang T F, Zeng R Z, Zhu H T, Chen L, Zhang Z M, Ding X H, Li W T, Zhang G Q. 2010. Effect of grain length gene GS3 in pyramiding breeding of rice. Mol Plant Breeding, 8(1): 59–66. (in Chinese with English abstract)
Yu S B, Li J X, Xu C G, Tan Y F, Gao Y J, Li X H, Zhang Q F, Maroof M A. 1997. Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA, 94(17): 9226–9231.
Zhang X J, Wang J F, Huang J, Lan H X, Wang C L, Yin C F, Wu Y Y, Tang H J, Qian Q, Li J Y, Zhang H S. 2012. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc Natl Acad Sci USA, 109(52): 21534–21539.
Zong G, Wang A H, Wang L, Liang G H, Gu M H, Sang T, Han B. 2012. A pyramid breeding of eight grain-yield related quantitative trait loci based on marker-assistant and phenotype selection in rice (Oryza sativa L.). J Genet Genom, 39: 335–350.
