Introgressions from Oryza rufipogon Increase Photosynthetic Efficiency of KMR3 Rice Lines
Received date: 2016-02-01
Accepted date: 2016-07-03
Online published: 2016-12-28
To understand the wild Oryza genome effect on photosynthesis and its relation to total dry matter accumulation in an elite rice variety, a set of 40 stable introgression lines (ILs) BC3F8 derived from a cross of Oryza sativa (KMR3) × Oryza rufipogon (WR120) were grown under well watered conditions. Leaf gas exchange measurements and leaf chlorophyll estimates were conducted at the flowering stage. The results revealed significant variations in net photosynthetic rate (Pn), transpiration rate (E), transpiration efficiency (Pn/E) and carboxylation efficiency (Pn/Ci). Pn showed significant positive correlation with E, stomatal conductance (gs), Pn/Ci and total canopy dry matter. Specific leaf area and leaf thickness were not significantly correlated with Pn. Thirty-seven out of 40 ILs showed higher Pn than KMR3 [11.28 μmol/(m2∙s)], and 20 ILs showed higher Pn than WR120 [15.08 μmol/(m2∙s)]. The line IL194 showed the highest Pn [21.62 μmol/(m2∙s)] with increased total canopy dry matter followed by lines IL381, IL106, IL363-12, IL198, IL86-18 and IL50, which exhibited Pn above 18.0 µmol/(m2∙s). The ILs with enhanced Pn are a potential source for developing rice varieties and hybrids with higher biomass and yield.
Key words： photosynthesis; wild species; rice; yield; biomass; introgression line
Haritha G., Vishnukiran T., Yugandhar P., Sarla N., Subrahmanyam D. . Introgressions from Oryza rufipogon Increase Photosynthetic Efficiency of KMR3 Rice Lines[J]. Rice Science, 2017 , 24(2) : 85 -96 . DOI: 10.1016/j.rsci.2016.07.006
| 1 | Abhilash Joseph E, Radhakrishnan V V, Chandramohanan K T, Mohanan K V.2014. Reduction of major photosynthetic pigments under salinity stress in some native rice cultivars of North Kerala, India.Int J Rec Sci Res, 5: 1602-1611. |
| 2 | All India Coordinated Rice Improvement Project (AICRIP). 2012. Annual Progress Reports. Hyderabad, India: Directorate of Rice Research. |
| 3 | All India Coordinated Rice Improvement Project (AICRIP). 2013. Annual Progress Reports. Hyderabad, India: Directorate of Rice Research. |
| 4 | Barbour M M, Warren C R, Farquhar G D, Forrester G, Brown H.2010. Variability in mesophyll conductance between barley genotypes, and effects on transpiration efficiency and carbon isotope discrimination.Plant Cell Environ, 33(7): 1176-1185. |
| 5 | Bhagsari A S, Brown R H.1986. Leaf photosynthesis and its correlation with leaf area.Crop Sci, 26(1): 127-132. |
| 6 | Cao S Q, Zhai H Q, Yang T N, Zhang R X, Kuang T Y.2001. Studies on photosynthetic rate and function duration of rice germplasm.Chin J Rice Sci, 15(1): 29-34. (in Chinese with English abstract) |
| 7 | Cassman K G.1994. Breaking the Yield Barrier: Proceedings of a Workshop on Rice Yield Potential in Favorable Environments. 29 November to 4 December, 1993. Los Baños, the Philippines: International Rice Research Institute. |
| 8 | Changhai S, Baodi D, Yunzhou Q, Yuxin L, Lei S, Mengyu L, Haipei L.2010. Physiological regulation of high transpiration efficiency in winter wheat under drought conditions.Plant Soil Environ, 56(7): 340-347. |
| 9 | Chen W F, Xu Z J, Zhang L.1995. Physiological Bases of Super High Yield Breeding in Rice. Shenyang, China: Liaoning Science and Technology Publishing Company: 1-2. |
| 10 | Cosentino S L, Patane C, Sanzone E, Copani V, Foti S.2007. Effects of soil water content and nitrogen supply on the productivity of Miscanthus × giganteus (Greef et Deu) Mediterranean environment.Indus Crop Prod, 25(1): 75-88. |
| 11 | de Mendiburu F. 2012. Agricolae: Statistical Procedures for Agricultural Research. R package version 1.2-4. . |
| 12 | Devendra R, Kumar U, Krishna Sastri K S.1980. Photosynthetic rate, dry matter accumulation and yield interrelationships in genotypes of rice.Proc Ind Natl Sci Acad, 46(5): 699-707. |
| 13 | Ding Z S, Li T, Zhu X G, Sun X F, Huang S H, Zhou B Y, Zhao M.2014. Three photosynthetic patterns characterized by cluster analysis of gas exchange data in two rice populations.Crop J, 2(1): 22-27. (in Chinese with English abstract) |
| 14 | Driever S M, Lawson T, Andralojc P J, Raines C A, Parry M A J.2014. Natural variation in photosynthetic capacity, growth, and yield in 64 field-grown wheat genotypes. J Exp Bot, 65(17): 4959-4973. |
| 15 | Evans J R.2013. Improving photosynthesis.Plant Physiol, 162: 1780-1793. |
| 16 | Evans L T, Dunstone R L.1970. Some physiological aspects of evolution in wheat.Aust J Biol Sci, 23: 725-741. |
| 17 | Evans L T.1993. Crop Evolution, Adaptation and Yield. Cambridge,USA: Cambridge University Press: 1-500. |
| 18 | Farquhar G D, von Caemmerer S, Berry J A.1980. A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species.Planta, 149(1): 78-90. |
| 19 | Farquhar G D, Ehleringer J R, Hubick K T.1989. Carbon isotope discrimination and photosynthesis.Annu Rev Plant Physiol, 40: 388-397. |
| 20 | Flexas J, Ribas-Carbo M, Diaz-Espejo A, Galmes J, Medrano H.2008. Mesophyll conductance to CO2: Current knowledge and future prospects.Plant Cell Environ, 31(5): 602-621. |
| 21 | Flexas J, Niinemets U, Galle A, Barbour M M, Centritto M, Diaz-Espejo A, Douthe C, Galmes J, Ribas-Caro M, Rodriguez P L, Rossello F, Soolanayakanahally R, Tomas M, Wright I J, Farquhar G D, Medrano H.2013. Diffusional conductances to CO2 as a target for increasing photosynthesis and photosynthetic water-use efficiency.Phot Res, 117(1): 45-59. |
| 22 | Flood P J, Harbinson J, Aarts M G M.2011. Natural genetic variation in plant photosynthesis.Trends Plant Sci, 16(6): 327-335. |
| 23 | Ganeshan P, Jain A, Parmar B, Rao A R, Sreenu K, Mishra P, Mesapogu S, Subrahmanyam D, Ram T, Sarla N, Rai V.2016. Identification of salt tolerant rice lines among interspecific BILs developed by crossing Oryza sativa × O. rufipogon and O. sativa × O. nivara.AJCS, 10: 220-228. |
| 24 | Giuliani R, Koteyeva N, Voznesenskaya E, Evans M A, Cousins A B, Edwards G E.2013. Coordination of leaf photosynthesis, transpiration and structural traits in rice and wild relatives (genus Oryza).Plant Physiol, 162(3): 1632-1651. |
| 25 | Grömping U.2006. Relative importance for linear regression in R: The package relaimpo. J Stat Sof, 17(1): 1-27. |
| 26 | Gu J F, Yin X Y, Stomph T J, Struik P C.2013. Can exploiting natural genetic variation in leaf photosynthesis contribute to increasing rice productivity? A simulation analysis.Plant Cell Environ, 37(1): 22-34. |
| 27 | Guo S B, Zhang D P, Lin X H.2010. Identification and mapping of a novel bacterial blight resistance gene Xa35(t) originated from Oryza minuta.Sci Agric Sin, 43: 2611-2618. (in Chinese with English abstract) |
| 28 | Hetherington A M, Woodward F I.2003. The role of stomata in sensing and driving environmental change.Nature, 424: 901-908. |
| 29 | Hirasawa T, Iida Y, Ishihara K.1988. Effect of leaf water potential and air humidity on photosynthetic rate and diffusive conductance in rice plants.Jpn J Crop Sci, 57: 112-118. |
| 30 | Horton P.2000. Prospects for crop improvement through the genetic manipulation of photosynthesis: Morphological and biochemical aspects of light capture.J Exp Bot, 51: 475-485. |
| 31 | Huang M, Yin X H, Jiang L G, Zou Y B, Deng G F.2015. Raising potential yield of short-duration rice cultivars is possible by increasing harvest index.Biotechnol Agron Soc Environ, 19: 153-159. |
| 32 | Hubbart S, Peng S, Horton P, Chen Y, Murchie E H.2007. Trends in leaf photosynthesis in historical rice varieties developed in the Philippines since 1966.J Exp Bot, 58: 3429-3438. |
| 33 | Ishihara K, Saitoh K.1987. Diurnal courses of photosynthesis, transpiration, and diffusive conductance in single leaf of rice plants grown in the paddy field under submerged condition.Jpn J Crop Sci, 56: 8-17. |
| 34 | Janardhan K, Murthy K S.1978. Association of photosynthetic efficiency with various growth parameters in rice.Proc Ind Natl Sci Acad, 44: 49-56. |
| 35 | Jiang H, Xu D Q.2001. The cause of the difference in leaf net photosynthetic rate between two soybean cultivars.Photosynthetica, 39(3): 453-459. |
| 36 | Kaladhar K, Swamy B P M, Babu A P, Reddy C S, Sarla N.2008. Mapping quantitative trait loci for yield traits in BC2F2 population derived from Swarna × O. nivara cross.Rice Genet Newsl, 24: 10. |
| 37 | Khush G S, Mackill D J, Sidhu G S.1989. Breeding rice for resistance to bacterial blight. In: International Rice Research Institute. Bacterial Blight of Rice. Manila, the Philippines: International Rice Research Institute: 207-217. |
| 38 | Khush G S.2000. Strategies for increasing yield potential of rice. In: Sheehy J E, Mitchell P L, Hardy B. Redesigning Rice Photosynthesis to Increase Yield. Proceedings of the Workshop on the Quest to Reduce Hunger: Redesigning Rice Photosynthesis. 30 November to 3 December, 1999. Los Baños, the Philippines: International Rice Research Institute and Elsevier: 207-212. |
| 39 | Kiran T V, Rao Y V, Subrahmanyam D, Rani N S, Bhadana V P, Rao P R, Voleti S R.2013. Variation in leaf photosynthetic characterstics in wild rice species.Photosynthetica, 51(3): 350-358. |
| 40 | Kondo M, Pablico P P, Aragones D V, Agbisit R.2004. Genotypic variations in carbon isotope discrimination, transpiration efficiency, and biomass production in rice as affected by soil water conditions and N.Plant Soil, 267(1): 165-177. |
| 41 | Kusumi K, Hirotsuka S, Kumamaru T, Iba K.2012. Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein.J Exp Bot, 63: 5635-5644. |
| 42 | Li S H, Yang Q W, Zheng G B, Li H, Lu X L, Han G M.2009. The genetic analysis on resistance to rice blast of rice progeny introduced with wild rice genes.Seed, 28: 36-40. (in Chinese with English abstract) |
| 43 | Li Y, Gao Y X, Xu X M, Shen Q R, Guo S W.2009. Light-saturated photosynthetic rate in high-nitrogen rice (Oryza sativa L.) leaves is related to chloroplastic CO2 concentration. J Exp Bot, 60(8): 2351-2360. |
| 44 | Lawlor D W.1995. Photosynthesis, productivity and environment.J Exp Bot, 46: 1449-1461. |
| 45 | Lichtenthaler H K, Wellburn A R.1983. Determinations of total carotenoids and chlorophylls a and b of leaf extracts in different solvents.Biochem Soc Trans, 11(5): 591-592. |
| 46 | Long S P, Zhu X G, Naidu S L, Ort D R.2006. Can improvement in photosynthesis increase crop yields?Plant Cell Environ, 29(3): 315-330. |
| 47 | Londo J P, Chiang Y C, Huang K H, Chiang T Y, Schaal B A.2006. Phylogeography of Asian wild rice, Oryza rufipogon reveals multiple independent domestications of cultivated rice, Oryza sativa.Proc Natl Acad Sci USA, 103: 9578-9583. |
| 48 | Makino A, Mae T, Ohira K.1988. Differences between wheat and rice in the enzymic properties of ribulose-1,5-bisphosphate carboxylase/oxygenase and the relationship to photosynthetic gas exchange.Planta, 174(1): 30-38. |
| 49 | Mann G C.1999a. Crop scientists seek a new revolution.Science, 283: 310-314. |
| 50 | Mann G C.1999b. Genetic engineers aim to soup up crop photosynthesis.Science, 283: 314-316. |
| 51 | Marri P R, Sarla N, Reddy L V, Siddiq E A.2005. Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon.BMC Genet, 6: 33. |
| 52 | Maruyama S, Tajima K.1990. Leaf conductance in japonica and indica rice varieties: I. Size, frequency, and aperture of stomata.Jpn J Crop Sci, 59(4): 801-808. |
| 53 | Masumoto C, Ishii T, Kataoka S, Hatanaka T, Uchida N.2004. Enhancement of rice leaf photosynthesis by crossing between cultivated rice, Oryza sativa and wild rice species,Oryza rufipogon. Plant Prod Sci, 7: 252-259. |
| 54 | Mitchell P L, Sheehy J E.2000. Performance of a potential C4 rice: Overview from quantum yield to grain yield. In: Sheehy J E, Mitchell P L, Hardy B. Redesigning rice photosynthesis to increase yield. Proceedings of the Workshop on the Quest to Reduce Hunger: Redesigning Rice Photosynthesis. 30 November to 3 December, 1999. Los Baños, the Philippines: International Rice Research Institute and Elsevier: 145-163. |
| 55 | Niu S L, Li L H, Jiang G M, Gao L M, Li Y G, Peng Y, Liu M Z.2004. Gas exchange and chlorophyll fluorescence response to simulated rainfall in Hedysarum fruticosum var. mongolicum.Photosynthetica, 42(1): 1-6. |
| 56 | Nunes-Nesi A, de Laia Nascimento V, de Oliveira Silva F M, Zsögön A, Araújo W L, Sulpice R.2016. Natural genetic variation for morphological and molecular determinants of plant growth and yield.J Exp Bot, 67(10): 2989-3001. |
| 57 | Ohno Y.1976. Varietal differences of photosynthetic efficiency and dry matter production in indica rice.Trop Agric, 53: 115-123. |
| 58 | Ohsumi A, Hamasaki A, Nakagawa H, Yoshida H, Shiraiwa T, Horie T.2007. A model explaining genotypic and ontogenetic variation of leaf photosynthetic rate in rice (Oryza sativa) based on leaf nitrogen content and stomatal conductance.Ann Bot, 99(2): 265-273. |
| 59 | Peng S, Laza R C, Khush G S, Sanico A L, Visperas R M, Garcia F V.1998. Transpiration efficiencies of indica and improved tropical japonica rice grown under irrigated conditions.Euphytica, 103(1): 103-108. |
| 60 | Peng S.2000. Single-leaf and canopy photosynthesis of rice. In: Sheehy J E, Mitchell P L, Hardy B. Redesigning Rice Photosynthesis to Increase Yield. Proceedings of the Workshop on the Quest to Reduce Hunger: Redesigning Rice Photosynthesis. 30 November to 3 December, 1999. Los Baños, the Philippines: International Rice Research Institute and Elsevier: 213-228. |
| 61 | Puteh A B, Mondal M M A, Ismail M R, Latif M A. 2014. Grain sterility in relation to dry mass production and distribution in rice (Oryza sativa L.).BioMed Res Int, 2014: 302179. |
| 62 | R core team. 2012. R: A language and environment for statistical computing (version 2.8). R Foundation for Statistical Computing, Vienna, Austria. . |
| 63 | Radin J W, Hartung W, Kimball B A, Mauney J R.1988. Correlation of stomatal conductance with photosynthetic capacity of cotton only in a CO2 enriched atmosphere: Mediation by abscisic acid?Plant Physiol, 88(4): 1058-1062. |
| 64 | Richards R A.2000. Selectable traits to increase crop photosynthesis and yield of grain crops.J Exp Bot, 51: 447-458. |
| 65 | Sankar B, Abdul Jaleel C, Manivannan P, Kishorekumar A, Somasundaram R, Panneerselvam R.2008. Relative efficacy of water use in five varieties of Abelmoschus esculentus (L.) Moench under water-limited conditions.Colloid Surface B, 62(1): 125-129. |
| 66 | Scafaro A P, Haynes P A, Atwell B J.2009. Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice.J Exp Bot, 61: 191-202. |
| 67 | Sheehy J E.2000. Limits to yield for C3 and C4 rice: An agronomist’s view. In: Sheehy J E, Mitchell P L, Hardy B. Redesigning Rice Photosynthesis to Increase Yield. Proceedings of the Workshop on the Quest to Reduce Hunger: Redesigning Rice Photosynthesis. 30 November to 3 December, 1999. Los Baños, the Philippines: International Rice Research Institute and Elsevier: 39-52. |
| 68 | Sharkey T D, Raschke K.1981. Effect of light quality on stomatal opening in leaves of Xanthium strumarium L.Plant Physiol, 68(5): 1170-1174. |
| 69 | Shi T, Bibby T S, Jiang L, Irwin A J, Falkowski P G.2005. Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria.Mol Biol Evol, 22(11): 2179-2189. |
| 70 | Sudhakar T, Panigrahy M, Lakshmanaik M, Babu A P, Reddy C S, Anuradha K, Swamy B P M, Sarla N.2012. Variation and correlation of phenotypic traits contributing to high yield in KMR3-Oryza rufipogon introgression lines.Int J Plant Breed Genet, 6(2): 69-82. |
| 71 | Swamy B P M, Sarla N.2008. Yield-enhancing quantitative trait loci (QTLs) from wild species.Biotechnol Adv, 26(1): 106-120. |
| 72 | Swamy B P M, Kaladhar K, Ramesha M S, Viraktamath B C, Sarla N.2011. Molecular mapping of QTLs for yield and related traits in Oryza sativa cv. Swarna × O. nivara (IRGC81848) backcross population.Rice Sci, 18(3): 178-186. |
| 73 | Swamy B P M, Kaladhar K, Shobharani N, Prasad G S V, Viraktamath B C, Reddy G A, Sarla N.2012. QTL analysis for grain quality traits in 2 BC2F2 populations derived from crosses between Oryza sativa cv Swarna and 2 accessions of O. nivara.J Hered, 103(3): 442-452. |
| 74 | Swamy B P M, Kaladhar K, Reddy G A, Viraktamath B C, Sarla N.2014. Mapping and introgression of QTL for yield and related traits in two backcross populations derived from Oryza sativa cv. Swarna and two accessions of O. nivara.J Genet, 93(3): 643-654. |
| 75 | Tanksley S D, McCouch S R.1997. Seed banks and molecular maps: Unlocking genetic potential from the wild.Science, 277: 1063-1066. |
| 76 | Teng S, Qian Q, Zeng D L, Kunihiro Y, Fujimoto K, Huang D, Zhu L H.2004. QTL analysis of leaf photosynthetic rate and related physiological traits in rice (Oryza sativa L.).Euphytica, 135(1): 1-7. |
| 77 | Thalapati S, Batchu A K, Neelamraju S, Ramanan R.2012. Os11GSK gene from a wild rice, O. rufipogon improves yield in rice.Funct Integr Genom, 12(2): 277-289. |
| 78 | Thalapati S, Guttikonda H, Nannapaneni N D, Adari P B, Reddy C S, Swamy B P M, Batchu A K, Basava R K, Viraktamath B C, Neelamraju S.2015. Heterosis and combining ability in rice as influenced by introgressions from wild species Oryza rufipogon including qyld2.1 sub-QTL into the restorer line KMR3.Euphytica, 202(1): 81-95. |
| 79 | Tong P, Yang S M, Ma J, Wu H Z, Fu T L, Li M, Wang M T.2008. Photosynthetic characteristic and dry matter accumulation of hybrid rice varieties under different light conditions.China J Appl Ecol, 19(3): 505-511. (in Chinese with English abstract) |
| 80 | Vaughan D A.1994. The Wild Relatives of Rice: A Genetic Resources. Los Banos: the Philippine: International Rice Research Institute: 136. |
| 81 | Wambugu P W, Furtado A, Waters Daniel L E, Nyamongo D O, Henry R J.2013. Conservation and utilization of African Oryza genetic resources.Rice, 6: 29. |
| 82 | Wang Z Y, Second G, Tanksley S D.1992. Polymorphism and phylogenetic relationship among species in the genus Oryza as determined by analysis of nuclear RFLPs.Theor Appl Genet, 83(5): 565-581. |
| 83 | Wong S C, Cowan I R, Farquhar G D.1985. Leaf conductance in relation to the rate of CO2 assimilation: I. Influence of nitrogen nutrition, phosphorous nutrition, photon flux density, and ambient partial pressure of CO2 during ontogeny.Plant Physiol, 78(4): 821-825. |
| 84 | Xiao J H, Li J M, Grandillo S, Ahn S N, Yuan L P, Tanksley S D, McCouch S R.1998. Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon.Genetics, 150(2): 899-909. |
| 85 | Xie X J, Shen S H, Li Y X, Zhao X Y, Li B B, Xu D F.2011. Effect of photosynthetic characteristic and dry matter accumulation of rice under high temperature at heading stage.Afr J Agric Res, 6(7): 1931-1940. |
| 86 | Yeo M E, Yeo A R, Flowers T J.1994. Photosynthesis and photorespiration in the genus Oryza.J Exp Bot, 45(5): 553-560. |
| 87 | Yue B, Xue W Y, Luo L J, Xing Y Z.2006. QTL analysis for flag leaf characteristics and their relationships with yield and yield traits in rice.Acta Genet Sin, 33(9): 824-832. |
| 88 | Zhao M, Lafitte H R, Sacks E, Dimayuga G, Botwright-Acuna T L.2008. Perennial O. sativa × O. rufipogon inter-specific hybrids, photosynthetic characteristics and their inheritance.Field Crops Res, 106(3): 203-213. |
| 89 | Zhao M, Ding Z, Lafitte R, Sacks E, Dimaygua G, Holt D.2010. Photosynthetic characteristics in Oryza species.Photosynthetica, 48(2): 234-240. |
| 90 | Zhao G Q, Ma B L, Ren C Z.2007. Growth, gas exchange, chlorophyll fluorescence, and ion content of naked oat in response to salinity.Crop Sci, 47(1): 123-131. |
| 91 | Zhao X Q, Zhao M, Xiao J T, Zhang W X, Guan D M, Wang M Y, Lu J, Zhang N.2003. Stomatal characteristics of leaves of high-photosynthetic efficiency progenies from a cross between Oryza sativa and Oryza rufipogon and their parents.Acta Agron Sin, 29: 216-221. (in Chinese with English abstract) |
| 92 | Zheng J X, Ma Z F, Song J D, Liu C, Li Y T, Huang D H, Wei S L, Zhang Y X, Mi K, Huang J Y, Chen M, Meng J R, Li R B, Chen B S.2011. Identification and mapping of QTLs for cold tolerance at the seedling stage in common wild rice (Oryza rufipogon).Chin J Rice Sci, 25: 52-58. (in Chinese with English abstract) |
| 93 | Zhu X G, Long S P, Ort D R.2010. Improving photosynthetic efficiency for greater yield.Annu Rev Plant Biol, 61: 235-261. |
/
| 〈 |
|
〉 |