Research Paper

Breeding Novel Short Grain Rice for Tropical Region to Combine Important Agronomical Traits, Biotic Stress Resistance and Cooking Quality in Koshihikari Background

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  • 1Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom 73140, Thailand
    2Tana Group International Co., Ltd., Phan, Chiang Rai 57120, Thailand
    3Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom 73140, Thailand
    4Faculty of Agricultural Product Innovation and Technology, Srinakharinwirot University, Bangkok 10110, Thailand
    5Faculty of Science Technology and Agriculture, Yala Rajabhat University, Mueang, Yala 95000, Thailand
    6Faculty of Agriculture, Princess of Naradhiwas University, Narathiwat 96000, Thailand

Received date: 2020-08-10

  Accepted date: 2020-10-26

  Online published: 2021-09-28

Abstract

Breeding program strategies to develop novel short grain white rice varieties such as japonica (short grain) that introgress biotic stress resistance and high grain quality have been developed using indica rice (Pin Kaset+4 and Riceberry) for applications in japonica rice (Koshihikari) improvement. Four breeding lines showing promising agronomic performance with short grain and low amylose content (< 20%) were obtained. In addition, sensory testing of these breeding lines showed high scores that similar to Koshihikari. Two promising lines, KP48-1-5 and KP48-1-9, which possessed a combination of four genes resistance to different biotic stresses (Bph3 + TPS + Xa21 + Pi-ta) and four genes for grain quality (GS3 + SSIIa + wxb + badh2), were developed using marker-assisted selection (MAS) with the pedigree method. The current study clearly illustrated the successful use of MAS in combining resistance to multiple biotic stresses while maintaining a high yield potential and preferred grain quality. Moreover, the results indicated that this breeding program, which includes crossing temperate japonica with indica, can create novel short grain rice varieties adapted to a tropical environment, like the japonica type.

Cite this article

Saichompoo Uthomphon, Narumol Possawat, Nakwilai Pawat, Thongyos Peeranut, Nanta Aekchupong, Tippunya Patompong, Ruengphayak Siriphat, Itthisoponkul Teerarat, Bueraheng Niranee, Cheabu Sulaiman, Malumpong Chanate . Breeding Novel Short Grain Rice for Tropical Region to Combine Important Agronomical Traits, Biotic Stress Resistance and Cooking Quality in Koshihikari Background[J]. Rice Science, 2021 , 28(5) : 479 -792 . DOI: 10.1016/j.rsci.2021.07.008

References

[1] AACC. 2000. Approved Methods of the American Association of Cereal Chemists. 10th edn. St. Paul, MN, USA: America Association of Cereal Chemists, John Wiley & Sons Inc.
[2] Allard R W. 1960. Principles of Plant Breeding. New York, USA: John Wiley & Sons Inc.
[3] Chun A, Lee H J, Hamaker B R, Janaswamy S. 2015. Effects of ripening temperature on starch structure and gelatinization, pasting, and cooking properties in rice (Oryza sativa). J Agric Food Chem, 63: 3085-3093.
[4] Das G, Rao G J. 2015. Molecular marker assisted gene stacking for biotic and abiotic stress resistance genes in an elite rice cultivar. Front Plant Sci, 6: 698.
[5] Gauch H G. 1988. Model selection and validation for yield trials with interaction. Biometrics, 44: 705-715.
[6] Hamaker B R, Griffin V K. 1993. Effect of disulfide bond-containing protein on rice starch gelatinization and pasting. Cereal Chem, 70: 377-380.
[7] Heinrichs E A, Medrano F G, Rapusas H R. 1985. Genetic Evaluation for Insect Resistance in Rice. Los Banos, the Philippines: International Rice Research Institute.
[8] Hori K, Yamamoto T, Yano M. 2017. Genetic dissection of agronomically important traits in closely related temperatejaponica rice cultivars. Breeding Sci, 67: 427-434.
[9] Hosoi N. 1979. Studies on meteorological fluctuation in the growth of rice plants: III. Relation between the heading response of rice varieties to temperature under natural daylength and the thermos- sensitivity, photosensitivity, basic vegetative growth under controlled environments. Jpn J Breeding, 29: 294-304. (in Japanese with English abstract)
[10] International Rice Research Institute (IRRI). 2013. Standard Evaluation System (SES) for Rice. 5th edn. Los Banos, Manila, the Philippines: International Rice Research Institute: 46.
[11] Ise K, Akama Y, Horisue N, Nakane A, Yokoo M, Ando I, Hata T, Sito M, Numaguchi K, Nemoto H. 2001. ‘Milky queen’ a new high-quality rice cultivar with low amylose content in endosperm. Bull Natl Inst Crop Sci, 2: 39-61. (in Japanese with English abstract)
[12] Ishizaka S, Uehara Y, Fujita Y, Okuno K, Horiuchi H, Miura K, Nakagahra M, Yamada T, Uchiyamada H, Samoto S. 1989. Breeding process and characteristic of new released variety Kinuhikari. Hokuriku Crop Sci, 24: 25-27. (in Japanese)
[13] Juliano B O. 1985. Criteria and test for rice grain quality. In: Rice Chemistry and Technology. Saint Paul, USA: American Association of Cereal Chemists (AACC): 443-513.
[14] Juliano B O, Villareal C P. 1993. Grain Quality Evaluation of World Rice. Manila, the Philippines: International Rice Research Institute.
[15] Kang K H. 2010. Made for the TROPICS. Rice Today, 9: 34-35.
[16] Kobayashi A, Hori K, Yamamoto T, Yano M. 2018. Koshihikari: A premium short-grain rice cultivar: Its expansion and breeding in Japan. Rice, 11: 15.
[17] Langmead B, Salzberg S. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods, 9: 357-359.
[18] Lee J S, Torollo G, Ndayiragije A, Bizimana J B, Choi I R, Gulles A, Yeo U S, Jeong O Y, Venkatanagappa S, Kim B K. 2018. Genetic relationship of tropical region-bred temperatejaponica rice(Oryza sativa) plants and their grain yield variations in three different tropical environments. Plant Breeding, 137: 857-864.
[19] LGC Group. 2016. SNPline genotyping automation. . (Accessed 5 January 2020)
[20] Li H, Prakash S, Nicholson T M, Fitzgerald M A, Gilbert R G. 2016. The importance of amylose and amylopectin fine structure for textural properties of cooked rice grains. Food Chem, 196: 702-711.
[21] Marchetti M A, Lai X, Bollich C N. 1987. Inheritance of resistance toPyricularia oryzae in rice cultivar grown in the United States. Phytopathology, 77: 799-804.
[22] McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo M A. 2010. The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res, 20: 1297-1303.
[23] Miyamoto M. 2017. Influence of changing Thai society on the Japanese restaurant industry in Thailand. Manusya: J Hum, 20: 13-32.
[24] Nakamura S, Okadome H, Yoza K, Haraguchi K, Okunishi T, Suzuki K, Sato H, Ohtsubo K. 2004. Differentiation and search for palatability-factors of world-wide rice grains by PCR method. J Jpn Soc Food Sci, 78: 764-779. (in Japanese with English abstract)
[25] Nakwilai P, Cheabu S, Narumon P, Saensuk C, Arikita S, Malumpong C. 2020. Evaluation of japonica rice(Oryza sativa L.) varieties and their improvement in terms of stability, yield and cooking quality by pure-line selection in Thailand. Sci Asia, 46: 157-168.
[26] Poosri S, Thilavech T, Pasukamonset P, Suparpprom C, Adisakwattana S. 2019. Studies on Riceberry rice (Oryza sativa L.) extract on the key steps related to carbohydrate and lipid digestion and absorption: A new source of natural bioactive substances. NFS J, 17: 17-23.
[27] Ruengphayak S, Chaichumpoo E, Phromphan S, Kamolsukyunyong W, Sukhaket W, Phuvanartnarubal E, Korinsak S, Korinsak S, Vanavichit A. 2015. Pseudo-backcrossing design for rapidly pyramiding multiple traits into a preferential rice variety. Rice, 8: 7.
[28] Rybka K, Miyamoto M, Ando I, Saito A, Kawasaki S. 1997. High resolution mapping of the indica-derived rice blast resistance genes: II. Pi-ta2 and Pi-ta and a consideration of their origin. Mol Plant Microbe Interact, 10: 517-524.
[29] Seemanon K, Yamao M, Hosono K. 2015. Production of Japanese rice through contract farming system in Wiang Pa Pao district, Chiang Rai Province, Thailand. Am J Rural Dev, 3(2): 41-51.
[30] Saleh M, Meullenet J F. 2015. Cooked rice texture and rice flour pasting properties; impacted by rice temperature during milling. J Food Sci Technol, 52: 1602-1609.
[31] Tao K, Yu W, Prakash S, Gibert R G. 2020. Investigating cooked rice textural properties by instrumental measurements. Food Sci Hum Wellness, 9(2): 130-135.
[32] Theerayout T. 2009. Identification of microsatellite markers (SSR) linked to a new bacterial blight resistance gene xa33(t) in rice cultivar ‘Ba7’. Maejo Int J Sci Technol, 3: 235-247.
[33] Tong C, Chen Y L, Tang F F, Xu F F, Huang Y, Chen H, Bao J S. 2014. Genetic diversity of amylose content and RVA pasting parameters in 20 rice accessions grown in Hainan, China. Food Chem, 161: 239-245.
[34] Wada T, Yasui H, Inoue T, Tsubone M, Ogata T, Doi K, Yoshimura A, Matsue Y, 2013. Validation of QTLs for eating quality of japonica rice ‘Koshihikari’ using backcross inbred lines. Plant Prod Sci, 16(2): 131-140.
[35] Warinrak B. 2013. Japonica Rice Production Technology in Thailand. Rice Department, Thailand: CRC. (in Thai)
[36] Win K M, Korinsak S, Jantaboon J, Siangliw M, Lanceras- Siangliw J, Sirithunya P, Vanavichit A, Pantuwan G, Jongdee B, Sishiwong N, Toojinda T. 2012. Breeding the Thai jasmine rice variety KDML105 for non-age-related broad-spectrum resistance to bacterial blight disease based on combined marker-assisted and phenotypic selection. Field Crops Res, 137: 186-194.
[37] Wonglom P, Watcharachaiyakup J, Patarapuwadol S, Kositratana W. 2015. Assessment of diversity among pathotype of Xanthomonas oryzae pv. oryzae prevalent in Thailand. Agric Sci J, 46(2): 165-175. (in Thai with English abstract)
[38] Xu Y J, Ying Y N, Ouyang S H, Duan X L, Sun H, Jiang S K, Sun S C, Bao J S. 2018. Factors affecting sensory quality of cooked japonica rice. Rice Sci, 25(6): 330-339.
[39] Yang Z, Sun X, Wang S, Zhang Q. 2003. Genetic and physical mapping of a new gene for bacterial blight resistance in rice. Theor Appl Genet, 106: 1467-1472.
[40] Yoshida S. 1983. Rice. In: Smith W H, Banta S J. Potential Productivity of Field Crops under Different Environments. Los Baños, the Philippines: International Rice Research Institute: 103-127.
[41] Yugander A, Sundaram R M, Ladhalakshmi D, Hajira S K, Prakasam V, Prasad M S, Madhav M S, Babu V R, Laha G S. 2017. Virulence profiling of Xanthomonas oryzae pv. oryzae isolates, causing bacterial blight of rice in India. Eur J Plant Pathol, 149: 171-191.
[42] Zhao C J, Xie J Q, Li L, Cao C J. 2017. Comparative transcriptomic analysis in the paddy rice under storage and identification of differentially regulated genes in response to high temperature and humidity. J Agric Food Chem, 65: 8145-8153.
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