1 Aerts R, Chapin F S. The mineral nutrition of wild plants revisited: A re-evaluation of processes and patterns. Adv Ecol Res, 2000, 30: 1–67.2 Ludewig U, Neuhauser B, Dynowski M. Molecular mechanisms of ammonium transport and accumulation in plants. FEBS Lett, 2007, 581: 2301–2308.3 Xie Y X, Xiong Z Q, Xing G X, Sun G Q, Zhu Z L. Assessment of nitrogen pollutant sources in surface waters of Taihu Lake region. Pedosphere, 2007, 17: 200–208.4 Zhu G H, Huang Z L. Identification of differentially expressed genes induced by ammonium nitrogen in rice using mRNA differential display. Rice Sci, 2008, 15(4): 247–250.5 D'Apuzzo E, Rogato A, Simon-Rosin U, El Alaoui H, Barbulova A, Betti M, Dimou M, Katinakis P, Marquez A, Marini A M, Udvardi M K, Chiurazzi M. Characterization of three functional high-affinity ammonium transporters in Lotus japonicus with differential transcriptional regulation and spatial expression. Plant Physiol, 2004, 134: 1763–1774.6 Javelle A, Lupo D, Li X D, Merrick M, Chami M, Ripoche P, Winkler F K. Structural and mechanistic aspects of Amt/Rh proteins. J Struct Biol, 2007, 158(3): 472–481.7 Ludewig U, von Wiren N, Frommer W B. Uniport of NH4+ by the root hair plasma membrane ammonium transporter LeAMT1;1. J Biol Chem, 2002, 277: 13548–13555.8 Zheng L, Kostrewa D, Berneche S, Winkler F K, Li X D. The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli. Proc Natl Acad Sci, 2004, 101(49): 17090–17095.9 Andrade S L A, Dickmanns A, Ficner R, Einsle O. Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus. Proc Natl Acad Sci USA, 2005, 102(42): 14994–14999.10 Loque D, Lalonde S, Looger L L, von Wiren N, Frommer W B. A cytosolic trans-activation domain essential for ammonium uptake. Nature, 2007, 446(7132): 195–198.11 von Wiren N, Gazzarrini S, Gojont A, Frommer W B. The molecular physiology of ammonium uptake and retrieval. Curr Opin Plant Biol, 2000, 3(3): 254–261.12 Loque D, von Wiren N. Regulatory levels for the transport of ammonium in plant roots. J Exp Bot, 2004, 55: 1293–1305.13 Gazzarrini S, Lejay L, Gojon A, Ninnemann O, Frommer W B, von Wiren N. Three functional transporters for constitutive, diurnally regulated, and starvation-induced uptake of ammonium into Arabidopsis roots. Plant Cell, 1999, 11: 937–948.14 Sohlenkamp C, Shelden M, Howitt S, Udvardi M. Characterization of Arabidopsis AtAMT2, a novel ammonium transporter in plants. FEBS Lett, 2000, 467: 273–278.15 Yuan L, Loque D, Ye F, Frommer W B, von Wiren N. Nitrogen-dependent posttranscriptional regulation of the ammonium transporter AtAMT1.1. Plant Physiol, 2007, 143: 732–744.16 Yuan L, Graff L, Loque D, Kojima S, Tsuchiya Y N, Takahashi H, von Wiren N. AtAMT1.4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis. Plant Cell Physiol, 2009, 50(1): 13–25.17 Yuan L, Loque D, Kojima S, Rauch S, Ishiyama K, Inoue E, Takahashi H, von Wiren N. The organization of high-affinity ammonium uptake in Arabidopsis roots depends on the spatial arrangement and biochemical properties of AMT1-type transporters. Plant Cell, 2007, 19: 2636–2652.18 Kaiser B N, Rawat S R, Siddiqi M Y, Masle J, Glass A D M. Functional analysis of an Arabidopsis T-DNA “knockout” of the high-affinity NH4+ transporter AtAMT1.1. Plant Physiol, 2002, 130: 1263–1275. 19 Ludewig U, Wilken S, Wu B, Jost W, Obrdlik P, El Bakkoury M, Marini A M, Andre B, Hamacher T, Boles E, von Wiren N, Frommer W B. Homo- and hetero-oligomerization of ammonium transporter-1 NH4+ uniporters. J Biol Chem, 2003, 278: 45603–45610.20 Pearson J N, Finnemann J, Schjoerring J K. Regulation of the high-affinity ammonium transporter (BnAMT1.2) in the leaves of Brassica napus by nitrogen status. Plant Mol Biol, 2002, 49: 483–490.21 Simon-Rosin U, Wood C, Udvardi M K. Molecular and cellular characterisation of LjAMT2.1, an ammonium transporter from the model legume Lotus japonicus. Plant Mol Biol, 2003, 51: 99–108.22 Suenaga A, Moriya K, Sonoda Y, Ikeda A, von Wiren N, Hayakawa T, Yamaguchi J, Yamaya T. Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants. Plant Cell Physiol, 2003, 44: 206–211.23 Deng R L, Gu J T, Lu W J, Xu H R, Cao Y F, Xiao K. Characterization, function and expression analysis of ammonium transporter gene OsAMT1.4 and OsAMT5 in rice (Oryza sativa). Sci Agric Sin, 2007, 40(11): 2395–2402.24 Finn R D, Tate J, Mistry J, Coggill P C, Sammut J S, Hotz H R, Ceric G, Forslund K, Eddy S R, Sonnhammer E L, Bateman A. The Pfam protein families database. Nucl Acids Res, 2008, 36: 281–288.25 Tusnady G E, Simon I. Principles governing amino acid composition of integral membrane proteins: Application to topology prediction. J Mol Biol, 1998, 283: 489–506.26 Tusnady G E, Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics, 2001, 17: 849– 850.27 Arai M, Mitsuke H, Ikeda M, Xia J X, Kikuchi T, Satake M, Shimizu T. ConPred II: A consensus prediction method for obtaining transmembrane topology models with high reliability. Nucl Acids Res, 2004, 32: W390–W393. 28 Xia J X, Ikeda M, Shimizu T. ConPred_elite: A highly reliable approach to transmembrane topology prediction. Comput Biol Chem, 2004, 28: 51–60.29 de Castro E, Sigrist C J A, Gattiker A, Bulliard V, Langendijk- Genevaux P S, Gasteiger E, Bairoch A, Hulo N. ScanProsite: Detection of PROSITE signature matches and ProRule- associated functional and structural residues in proteins. Nucl Acids Res, 2006, 34: W362–W365.30 Sigrist C J A, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P. PROSITE: A documented database using patterns and profiles as motif descriptors. Brief Bioinform, 2002, 3: 265–274.31 Kitano T, Saitou N. Evolutionary history of the Rh blood group-related genes in vertebrates. Immunogenetics, 2000, 51(10): 856–862.32 Shelden M C, Dong B, de Bruxelles G L, Trevaskis B, Whelan J, Ryan P R, Howitt S M, Udvardi M K. Arabidopsis ammonium transporters, AtAMT1.1 and AtAMT1.2, have different biochemical properties and functional roles. Plant & Soil, 2001, 231: 151–160.33 Salvemini F, Marini A M, Riccio A, Patriarca E J, Chiurazzi M. Functional characterization of an ammonium transporter gene from Lotus japonicus. Gene, 2001, 270: 237–243.34 Loque D, Yuan L, Kojima S, Gojon A, Wirth J, Gazzarrini S, Ishiyama K, Takahashi H, von Wiren N. Additive contribution of AMT1.1 and AMT1.3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots. Plant J, 2006, 48: 522–534.35 Sohlenkamp C, Wood C C, Roeb G W, Udvardi M K. Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane. Plant Physiol, 2002, 130: 1788–1796.36 Conroy M J, Durand A, Lupo D, Li X D, Bullough P A, Winkler F K, Merrick M. The crystal structure of the Escherichia coli AmtB-GlnK complex reveals how GlnK regulates the ammonia channel. Proc Natl Acad Sci USA, 2007, 104(4): 1213–1218.37 Tornroth-Horsefield S, Wang Y, Hedfalk K, Johanson U, Karlsson M, Tajkhorshid E, Neutze R, Kjellbom P. Structural mechanism of plant aquaporin gating. Nature, 2006, 439 (7077): 688–694.38 Smith D G, Garcia-Pedrajas M D, Gold S E, Perlin M H. Isolation and characterization from pathogenic fungi of genes encoding ammonium permeases and their roles in dimorphism. Mol Microbiol, 2003, 50: 259–275.39 Nuhse T S, Stensballe A, Jensen O N, Peck S C. Phospho- proteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell, 2004, 16: 2394– 2405.40 Benschop J J, Mohammed S, O’Flaherty M, Heck A J, Slijper M, Menke F L. Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol Cell Prot, 2007, 6: 1198–1214.41 Hem S, Rofidal V, Sommerer N, Rossignol M. Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters. Biochem Biophys Res Comm, 2007, 363: 375–380.42 Neuhauser B, Dynowski M, Mayer M, Ludewig U. Regulation of NH4+ transport by essential cross talk between AMT monomers through the carboxyl tails. Plant Physiol, 2007, 143: 1651–1659.43 Blom N, Gammeltoft S, Brunak S. Sequence- and structure- based prediction of eukaryotic protein phosphorylation sites. J Mol Biol, 1999, 294(5): 1351–1362.44 Marini A M, André B. In vivo N-glycosylation of the Mep2 high-affinity ammonium transporter of Saccharomyces cerevisiae reveals an extracytosolic N-terminus. Mol Microbiol, 2000, 38(3): 552–564.45 Marini A M, Soussi-Boudekou S, Vissers S, Andre B. A family of ammonium transporters in Saccharomyces cerevisiae. Mol Cell Biol, 1997, 17: 4282–4293.46 Monahan B J, Unkles S E, Tsing I T, Kinghorn J R, Hynes M J, Davis M A. Mutation and functional analysis of the Aspergillus nidulans ammonium permease MeaA and evidence for interaction with itself and MepA. Fungal Genet Biol, 2002, 36: 35–46.47 Severi E, Javelle A, Merrick M. The conserved carboxy- terminal region of the ammonia channel AmtB plays a critical role in channel function. Mol Membr Biol, 2007, 24(2): 161– 171.48 Sonoda Y, Ikeda A, Saiki S, Wiren N V, Yamaya T, Yamaguchi J. Distinct expression and function of three ammonium transporter genes (OsAMT1.1–1.3) in rice. Plant Cell Physiol, 2003, 44: 726–734.49 Kumar A, Silim S N, Okamoto M, Siddiqi M Y, Glass A D M. Differential expression of three members of the AMT1 gene family encoding putative high-affinity NH4+ transporters in roots of Oryza sativa subspecies indica. Plant Cell Environ, 2003, 26: 907–914.50 Li B Z, Xin W J, Sun S B, Shen Q R, Xu G H. Physiological and molecular responses of nitrogen-starved rice plants to re-supply of different nitrogen sources. Plant & Soil, 2006, 287: 145–159.51 Li S M, Shi W M. Quantitative characterization of nitrogen regulation of OsAMT1;1, OsAMT1;2, and OsAMT2;2 expression in rice seedlings. Russian J Plant Physiol, 2006, 53(6): 837– 843.52 Zhao S P, Shi W M. Expression patterns of OsAMT(1.1–1.3), OsAMT3.1 and OsAMT4.1 in rice (Oryza sativa L.). Soil, 2007, 39(3): 460–464.53 Sun S B, Li B Z, Hu J, Xu G H. Establishment and application of a real-time fluoresence quantitative PCR for detecting transcripts of low abundance gene, OsAMT1.3, in rice. Chinese J Rice Sci, 2006, 20(1): 8–12. (in Chinese with English abstract)54 Xu G H, Li B Z, Satoh K, Shen Q R, Kikuchi S. Dissecting the rice genes responsible for long time changes of nitrogen supply forms and nitrogen starvation. Plant Biol (Rockville), 2006: 156.55 Lee R B, Ayling S M. The effect of methionine sulfoximine on the absorption of ammonium by maize and barley roots over short periods. J Exp Bot, 1993, 44: 53–63.56 Feng J, Volk R J, Jackson W A. Inward and outward transport of ammonium in roots of maize and sorghum: Contrasting effects of methionine sulfoximine. J Exp Bot, 1994, 45: 429– 439.57 Glass A D M, Erner Y, Kronzucker H J, Schjoerring J K, Siddiqi M Y, Wang M Y. Ammonium fluxes into plant roots: Energetics, kinetics and regulation. Zeitschrift fur Pflanzenernahrung Bodenkunde, 1997, 160: 261–268.58 Sonoda Y, Ikeda A, Saiki S, Yamaya T, Yamaguchi J. Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice. Plant Cell Physiol, 2003, 44: 1396–1402.59 Li X D, Lupo D, Zheng L, Winkler F. Structural and functional insights into the AmtB/Mep/Rh protein family. Transfusion Clinique et Biologique, 2006, 13: 65–69.60 Dreyer I, Horeau C, Lemaillet G, Zimmermann S, Bush D, Rodriguez-Navarro A, Schachtman D, Spalding E, Sentenac H, Gaber R. Identification and characterization of plant transporters using heterologous expression systems. J Exp Bot, 1999, 50: 1073–1087. |