Rice Science ›› 2022, Vol. 29 ›› Issue (2): 118-132.DOI: 10.1016/j.rsci.2021.08.002
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R. Abdul Fiyaz1(), D. Shivani2, K. Chaithanya1, K. Mounika2, M. Chiranjeevi1, G. S. Laha1, B. C. Viraktamath1, L. V. Subba Rao1, R. M. Sundaram1
Received:
2021-01-16
Accepted:
2021-08-24
Online:
2022-03-28
Published:
2022-02-09
Contact:
R. Abdul Fiyaz
R. Abdul Fiyaz, D. Shivani, K. Chaithanya, K. Mounika, M. Chiranjeevi, G. S. Laha, B. C. Viraktamath, L. V. Subba Rao, R. M. Sundaram. Genetic Improvement of Rice for Bacterial Blight Resistance: Present Status and Future Prospects[J]. Rice Science, 2022, 29(2): 118-132.
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R gene | Chr | Position (bp) | Donor | Source | Remark | Cloned | Reference |
---|---|---|---|---|---|---|---|
Xa1 | 4 | 31 638 099-31 644 795 | Kogyoku, Java 14 | Japan | Dominant | Yes | Sakaguchi, |
Xa2 | 4 | - | Rantai Emas II, Tetep | Vietnam | Dominant | No | Sakaguchi, |
Xa3/Xa26 | 11 | 28 399 360-28 402 773 | Wase Aikoku 3 | Japan | Dominant | Yes | Ezuka et al, |
Xa4 | 11 | 176-485 | TKM6, IR20, IR22, IR72 | India | Dominant | Yes | Petpisit et al, |
xa5 | 5 | 437 010-443 270 | DZ192, IR1545-339 | Bangladesh | Recessive | Yes | Petpisit et al, |
Xa6/xa3 | 11 | - | Malagkit Sungsong Zenith | USA | Dominant | No | Sidhu, |
Xa7 | 6 | - | DZ78, DV85 | Bangladesh | Dominant | No | Sidhu et al, |
xa8 | 7 | - | PI231129 | USA | Recessive | No | Singh et al, |
Xa9 | 11 | - | Khaolay Nhay | Laos | Dominant | No | Singh et al, |
Xa10 | 11 | 22 203 734-22 204 676 | Cas 209 | the Philippines | Dominant | Yes | Yoshimura et al, |
Xa11 | 3 | - | RP9-3 | the Philippines | Dominant | No | Ogawa and Yamamoto, et al, 2009 |
Xa12 | 4 | - | Kogyoku, Java 14 | Japan | Dominant | No | Ogawa et al, |
xa13 | 8 | 26 725 952-26 728 794 | BJ1, Chinsurah Eoro II | India | Recessive | Yes | Yoshimura et al, |
Xa14 | 4 | - | TN1 | China | Dominant | No | Taura et al, |
xa15 | - | - | M41 | Japan | Recessive | No | Nakai et al, |
Xa16 | - | - | Tetep | Vietnam | Dominant | No | Sanchez et al, |
Xa17 | - | - | Asominori | Japan | Dominant | No | Ogawa et al, |
Xa18 | - | - | Toyonishiki, Milyang 23, IR24 | Japan | Dominant | No | Ogawa et al, |
xa19 | - | - | XM5 | the Philippines | Recessive | No | Taura et al, |
xa20 | - | - | XM6 | the Philippines | Recessive | No | Taura et al, |
Xa21 | 11 | 20 802 924-20 806 518 | O. longistaminata | Africa, Mali | Dominant | Yes | Khush et al, |
Xa22(t) | 11 | - | Zhachanglong | China | Dominant | No | Lin et al, |
Xa23 | 11 | 22 203 734-22 204 676 | O. rufipogon | China | Dominant | Yes | Zhang et al, |
xa24 | 2 | - | DV86, DV85, Aus 295 | Bangladesh | Recessive | No | Mir and Khush, |
xa25(t) | 12 | 17 302 073-17 305 326 | HX-3, Minghui 63 | China | Recessive | Yes | Lee et al, |
xa26(t) | 11 | - | Minghui 63 | China | Recessive | No | Lee et al, |
Xa27(t) | 6 | 31 248 787-32 465 040 | O. minuta IRGC101141, IRBB27 | the Philippines | Dominant | Yes | Amante-Bordeos et al, Lee et al, |
xa28(t) | - | - | Lota Sail | Bangladesh | Recessive | No | Lee et al, |
Xa29(t) | 1 | - | B5 | Portugal, Spain | Dominant | No | Tan et al, |
Xa30(t) | 11 | - | O. rufipogon Y238 | India | Dominant | No | Jin et al, |
xa31(t) | 4 | - | Zhachanglong | China | Recessive | No | Wang et al, |
xa32(t) | 11 | - | C4064 | Australia | Recessive | No | Zheng et al, |
Xa33 | 7 | - | O. nivara | Thailand | Dominant | No | Kumar et al, |
Xa33(t) | 6 | - | Ba7, O. nivara | Thailand | Dominant | No | Korinsak et al, |
xa34(t) | 1 | - | O. brachyantha | Sri Lanka | Recessive | No | Ram et al, |
Xa35(t) | 11 | - | O. minuta | the Philippines | Dominant | No | Guo et al, |
Xa36(t) | 11 | - | C4059 | China | Dominant | No | Miao et al, |
Xa38 | 4 | - | O. nivara IRGC81825 | India | Dominant | No | Kaur et al, |
Xa39 | 11 | - | FF329 | China, the Philippines | Dominant | No | Zhang et al, |
Xa40(t) | 11 | - | IR65482-7-216-1-2 | Korea | Dominant | No | Kim et al, |
xa41(t) | 11 | 18 174 478-18 171 678 | Rice germplasm | - | Recessive | Yes | Hutin et al, |
xa42 | 3 | - | XM14, a mutant of IR24 | Japan | Recessive | No | Busungu et al, |
Xa43(t) | 11 | 11 943 779-11 963 686 | P8 | Japan | Dominant | No | Kim and Reinke, |
xa44(t) | 11 | 11 964 077-11 985 463 | IR73571-3B-11-3-K3 | Japan | Recessive | No | Kim, |
xa45(t) | 8 | 26 725 954-26 728 807 | O. glaberrima IRGC102600B | the Philippines | Recessive | No | Neelam et al, |
Xa46(t) | 11 | - | Mutant H120 | Japan | Dominant | No | Chen et al, |
Table 1. Summary of resistance genes to bacterial blight in rice.
R gene | Chr | Position (bp) | Donor | Source | Remark | Cloned | Reference |
---|---|---|---|---|---|---|---|
Xa1 | 4 | 31 638 099-31 644 795 | Kogyoku, Java 14 | Japan | Dominant | Yes | Sakaguchi, |
Xa2 | 4 | - | Rantai Emas II, Tetep | Vietnam | Dominant | No | Sakaguchi, |
Xa3/Xa26 | 11 | 28 399 360-28 402 773 | Wase Aikoku 3 | Japan | Dominant | Yes | Ezuka et al, |
Xa4 | 11 | 176-485 | TKM6, IR20, IR22, IR72 | India | Dominant | Yes | Petpisit et al, |
xa5 | 5 | 437 010-443 270 | DZ192, IR1545-339 | Bangladesh | Recessive | Yes | Petpisit et al, |
Xa6/xa3 | 11 | - | Malagkit Sungsong Zenith | USA | Dominant | No | Sidhu, |
Xa7 | 6 | - | DZ78, DV85 | Bangladesh | Dominant | No | Sidhu et al, |
xa8 | 7 | - | PI231129 | USA | Recessive | No | Singh et al, |
Xa9 | 11 | - | Khaolay Nhay | Laos | Dominant | No | Singh et al, |
Xa10 | 11 | 22 203 734-22 204 676 | Cas 209 | the Philippines | Dominant | Yes | Yoshimura et al, |
Xa11 | 3 | - | RP9-3 | the Philippines | Dominant | No | Ogawa and Yamamoto, et al, 2009 |
Xa12 | 4 | - | Kogyoku, Java 14 | Japan | Dominant | No | Ogawa et al, |
xa13 | 8 | 26 725 952-26 728 794 | BJ1, Chinsurah Eoro II | India | Recessive | Yes | Yoshimura et al, |
Xa14 | 4 | - | TN1 | China | Dominant | No | Taura et al, |
xa15 | - | - | M41 | Japan | Recessive | No | Nakai et al, |
Xa16 | - | - | Tetep | Vietnam | Dominant | No | Sanchez et al, |
Xa17 | - | - | Asominori | Japan | Dominant | No | Ogawa et al, |
Xa18 | - | - | Toyonishiki, Milyang 23, IR24 | Japan | Dominant | No | Ogawa et al, |
xa19 | - | - | XM5 | the Philippines | Recessive | No | Taura et al, |
xa20 | - | - | XM6 | the Philippines | Recessive | No | Taura et al, |
Xa21 | 11 | 20 802 924-20 806 518 | O. longistaminata | Africa, Mali | Dominant | Yes | Khush et al, |
Xa22(t) | 11 | - | Zhachanglong | China | Dominant | No | Lin et al, |
Xa23 | 11 | 22 203 734-22 204 676 | O. rufipogon | China | Dominant | Yes | Zhang et al, |
xa24 | 2 | - | DV86, DV85, Aus 295 | Bangladesh | Recessive | No | Mir and Khush, |
xa25(t) | 12 | 17 302 073-17 305 326 | HX-3, Minghui 63 | China | Recessive | Yes | Lee et al, |
xa26(t) | 11 | - | Minghui 63 | China | Recessive | No | Lee et al, |
Xa27(t) | 6 | 31 248 787-32 465 040 | O. minuta IRGC101141, IRBB27 | the Philippines | Dominant | Yes | Amante-Bordeos et al, Lee et al, |
xa28(t) | - | - | Lota Sail | Bangladesh | Recessive | No | Lee et al, |
Xa29(t) | 1 | - | B5 | Portugal, Spain | Dominant | No | Tan et al, |
Xa30(t) | 11 | - | O. rufipogon Y238 | India | Dominant | No | Jin et al, |
xa31(t) | 4 | - | Zhachanglong | China | Recessive | No | Wang et al, |
xa32(t) | 11 | - | C4064 | Australia | Recessive | No | Zheng et al, |
Xa33 | 7 | - | O. nivara | Thailand | Dominant | No | Kumar et al, |
Xa33(t) | 6 | - | Ba7, O. nivara | Thailand | Dominant | No | Korinsak et al, |
xa34(t) | 1 | - | O. brachyantha | Sri Lanka | Recessive | No | Ram et al, |
Xa35(t) | 11 | - | O. minuta | the Philippines | Dominant | No | Guo et al, |
Xa36(t) | 11 | - | C4059 | China | Dominant | No | Miao et al, |
Xa38 | 4 | - | O. nivara IRGC81825 | India | Dominant | No | Kaur et al, |
Xa39 | 11 | - | FF329 | China, the Philippines | Dominant | No | Zhang et al, |
Xa40(t) | 11 | - | IR65482-7-216-1-2 | Korea | Dominant | No | Kim et al, |
xa41(t) | 11 | 18 174 478-18 171 678 | Rice germplasm | - | Recessive | Yes | Hutin et al, |
xa42 | 3 | - | XM14, a mutant of IR24 | Japan | Recessive | No | Busungu et al, |
Xa43(t) | 11 | 11 943 779-11 963 686 | P8 | Japan | Dominant | No | Kim and Reinke, |
xa44(t) | 11 | 11 964 077-11 985 463 | IR73571-3B-11-3-K3 | Japan | Recessive | No | Kim, |
xa45(t) | 8 | 26 725 954-26 728 807 | O. glaberrima IRGC102600B | the Philippines | Recessive | No | Neelam et al, |
Xa46(t) | 11 | - | Mutant H120 | Japan | Dominant | No | Chen et al, |
Gene | Protein | Cognate Avr genes | Reference | |
---|---|---|---|---|
Gene | Encoding protein | |||
Xa1 | NBS-LRR | PthXo1/Tal4/Tal9d | TAL effector | Yoshimura et al, |
Xa3/Xa26 | LRR-RLK | AvrXa3 | Unknown | Gao et al, |
Xa4 | WAK | Not determined | Unknown | Hu et al, |
xa5 | TFIIA transcription factor | Avrxa5/PthXo7 | TAL effector | Blair et al, |
Xa10 | TM | AvrXa10 | TAL effector | Tian et al, |
xa13 (OsSWEET11) | SWEET-type protein | PthXo1 | TAL effector | Chu et al, |
Xa21 | LRR-RLK | RaxX | Unknown | Song et al, |
Xa23 | TM | AvrXa23 | TAL effector | Wang et al, |
xa25 (OsSWEET13) | SWEET-type protein | PthXo2 | TAL effector | Liu et al, |
Xa27 | Apoplast protein | AvrXa27 | TAL effector | Lee et al, |
xa41 (OsSWEET14) | SWEET-type protein | AvrXa7/PthXo3/TalC/ Tal5 | TAL effector | Hutin et al, |
Table 2. Cloned genes of bacterial leaf blight in rice and cognate Xanthomonas oryzae Avr genes.
Gene | Protein | Cognate Avr genes | Reference | |
---|---|---|---|---|
Gene | Encoding protein | |||
Xa1 | NBS-LRR | PthXo1/Tal4/Tal9d | TAL effector | Yoshimura et al, |
Xa3/Xa26 | LRR-RLK | AvrXa3 | Unknown | Gao et al, |
Xa4 | WAK | Not determined | Unknown | Hu et al, |
xa5 | TFIIA transcription factor | Avrxa5/PthXo7 | TAL effector | Blair et al, |
Xa10 | TM | AvrXa10 | TAL effector | Tian et al, |
xa13 (OsSWEET11) | SWEET-type protein | PthXo1 | TAL effector | Chu et al, |
Xa21 | LRR-RLK | RaxX | Unknown | Song et al, |
Xa23 | TM | AvrXa23 | TAL effector | Wang et al, |
xa25 (OsSWEET13) | SWEET-type protein | PthXo2 | TAL effector | Liu et al, |
Xa27 | Apoplast protein | AvrXa27 | TAL effector | Lee et al, |
xa41 (OsSWEET14) | SWEET-type protein | AvrXa7/PthXo3/TalC/ Tal5 | TAL effector | Hutin et al, |
Gene/QTL | Donor parent | Recurrent parent | Marker | Marker type | Reference |
---|---|---|---|---|---|
Xa21 | - | IR24 | pTA248 | STS | Ronald et al, |
Xa3, Xa4, xa5, Xa10 | IRBB3, IRBB4, IRBB5, IRBB10 | IR24 | - | RFLP, RAPD | Yoshimura et al, |
Xa4, xa5, xa13, Xa21 | IRBB4, IRBB5, IRBB13, IRBB21 | IR24 | Npb181, Npb78, RG556, RG136, pTA248 | RFLP | Huang et al, |
Xa21 | IRBB21 | Minghui 63 | 248, 21, C189, AB9 | RFLP | Chen et al, |
xa5, xa13, Xa21 | IRBB59 | IR65598-112, IR65600-42, IR65600-96 | RG556, RG207, RG136, pTA248 | STS | Sanchez et al, |
Xa21 | IRBB21 | 6078 | 21, C189, AB9 | AFLP | Chen et al, |
xa5, xa13, Xa21 | - | IR64 | - | STS, SSR | Davierwala et al, |
xa5, xa13, Xa21 | IRBB5, IRBB13, IRBB21, IRBB62 | PR106 | RG556, RG136, pTA248 | STS | Singh et al, |
xa5, xa13, Xa21 | IRBB5, IRBB13, IRBB21 | IR24 | RG556, RM122, RG136, pTA248 | STS | Ramalingam et al, |
xa5 | IRBB5 | IR64 | RG556 | CAPS | Toenniessen et al, |
xa13, Xa21 | IRBB55 | Pusa Basmati 1 | RG136, pTA248 | STS | Joseph et al, |
Xa7, Xa21 | DV85, IRBB21 | Minghui 63 | M1, M2, M3, M4, M5, pTA 248 | RAPD | Zhang et al, |
xa5, xa13, Xa21 | SS1113 | Samba Mahsuri (BPT5204) | RG556, RG136, pTA248 | STS | Sundaram et al, |
xa13, Xa21 | IRBB55 | Pusa Basmati 1 | RG136, pTA248 | STS | Gopalakrishnan et al, |
Xa4, xa5, xa13, Xa21 | NH56 | Jyothi, IR50 | G181, RG556, RG136, pTA248 | RFLP, STS | Bharathkumar et al, |
xa5, xa13, Xa21 | SS1113 | Triguna | RG556, RG136, pTA248 | STS | Sundaram et al, |
Xa23 | CBB23-2 | Luyouzhan | RM206 | SSR | Zhou et al, |
xa13, Xa21 | Pusa 1460 | Pusa RH10 | RG136, pTA248 | STS | Basavaraj et al, |
xa5, xa13, Xa21 | IRBB60 | ADT43, ADT47 | RM122, RG136, pTA248 | STS | Bharani et al, |
xa13, Xa21 | PR106-P2 | Dehraduni Basmati | RG136, pTA248 | STS | Rajpurohit et al, |
Xa21 | ISM | KMR-3R | pTA248 | STS | Hari et al, |
xa13, Xa21 | IET17948 | Basmati 370, Basmati 386 | RG136, pTA248 | STS | Bhatia et al, |
Xa4, Xa21, Xa27 | IR64, IRBB21, IRBB27 | MH725 | RM22421, pTA248, 5198 | SSR, STS, RFLP | Luo et al, |
Xa23 | CBB23 | Rongfeng B | RM206 | SSR | Fu et al, |
Xa7, Xa21, Xa22, Xa23 | Huahui 20, 96L011, CBB23 | Huahui 1035 | RM20593, pTA248, RM224, 03STS1 | Gene linked | Huang et al, |
Xa21 | IR1188 | Khao Dawk Mali 105 | PB7-PB8 | Gene specific | Win et al, |
xa5, xa13, Xa21 | IRBB60 | Tapaswini | RG556, RG136, pTA248 | STS | Dokku et al, |
Xa21, Xa27 | WH421, IRBB27 | Khao Dawk Mali 105 | 21, RMXa27 | STS, SSR | Luo and Yin, |
Xa21, xa13 | ISM | Taraori Basmati, Basmati 386 | pTA248, xa13-prom | Gene based | Pandey et al, |
xa5 | IR62266 | RD6 | RM122/RM159 | SSR | Pinta et al, |
Xa21 | Samba Mahsuri | IR58025A | pTA248 | STS | Hari et al, |
Xa4, xa5, xa13, Xa21 | IRBB60 | Mahsuri PRR78 KMR3 | Npb181, RM122, RG136, pTA248 | STS, SSR | Guvvala et al, |
xa5, Xa21, xa33 | RGDU-07097-1-8M-9 | MK-75 | PAxa5, PB7-PB8, RM7243, RM5509 | Gene specific, SSR | Win et al, |
Xa4, Xa21 | WH421 | Siputeh | RM224, 21 | SSR, STS | Luo et al, |
Xa21 | RP-Bio-Patho-2 | DRR17B | pTA248 | STS | Balachiranjeevi et al, |
Xa23 | CBB23 | Guangzhan 63S, Liangyou 6326 | C189 | EST | Ni et al, |
Xa23 | HBQ810 | Guangzhan 63-4S | M-Xa23 | InDel | Jiang et al, |
xa13, Xa21 | SPS97, Pusa 1460 | PB1121, PB6 | xa13-prom, pTA248 | Gene based | Ellur et al, |
xa13, Xa21 | ISM | MTU1010 | xa13-prom, pTA248 | Gene based | Arunakumari et al, |
Xa38 | PR114-Xa38 | PB1121 | Os04g53050-1 | Gene linked | Ellur et al, |
Xa4, xa5, Xa7, xa13, Xa21 | IRBB66 | Tainung 82, Tainung 84, Tainung 71, Tai-kang 2, Tai-kang 9, Tai-kang 16, Taoyuan 3, Tainan 110 | Xa4F/4R, RM604F/604R, Xa7F/7-1R/7-2R, Xa13F/13R, Xa21F/21R | Gene linked | Yap et al, |
xa5, xa13, Xa21 | CRMAS2232-85 | Jalmagna | Xa5S, xa5SR/R, RG136, pTA248 | STS | Pradhan et al, |
Xa21, Xa33 | RPBio Patho-1 FBR1-15 | RPHR-1005 | pTA248, RMWR7.6 | Gene linked | Abhilash Kumar et al, |
Xa21, Xa27 | Wanhui 21, IRBB27 | 9311 | 21, RMXa27 | STS, SSR | Luo et al, |
Xa21, xa13, xa5 | IRBB60 | CSR30 | pTA248, RG136, RG556 | STS | Baliyan et al, |
Xa21, xa13, xa5 | RP-Bio-226 | Dubraj, Safri 17 | Xa21, PT248-1, xa13Pro, xa5R, xa5S, RM13 | SSR | Dnyaneshwar et al, |
Gene/QTL | Donor parent | Recurrent parent | Marker | Marker type | Reference |
Xa21 | IRBB21 | LT2 | pTA248 | RFLP | Nguyen et al, |
Xa21, Xa33 | ISM, Samba Mahsuri | DRR17B | pTA248, RMWR7.6 | Gene-specific | Balachiranjeevi et al, |
Xa7 | YR7029-39 | Guangzhan 63-4S | RM20582 | SSR | Mi et al, |
xa13, Xa21 | - | CO43 | xa13-prom, pTA248 | Gene based | Krishnakumar and Kumaravadiv, |
Xa38 | PR114 | ISM | Os04g53050-1 | Gene specific | Yugander et al, |
Xa40 | IR65482-7-126-1-2 | Junam | ID55.WA3, RM1233 | STS, SSR | Reinke et al, |
Xa4, xa5, Xa21 | IRBB60 | Super Basmati | MP1, MP2, RM122, pTA248 | SSR | Sabar et al, |
Xa4, Xa21, xa5, xa13 | IRBB60 | Putra-1 | MP, RM13, RM21, xa13-prom, Xa21Fr, pTA248 | SSR | Chukwu et al, |
Xa4, xa5, Xa7, xa13, Xa21 | IRBB66 | Tainung 82 | Xa4F/4R, RM604F/604R, Xa7F/7-1R/7-2R, Xa13F/13R, Xa21F/21R | SSR | Hsu et al, |
Table 3. Successful examples of marker-assisted breeding for bacterial blight disease resistance in rice.
Gene/QTL | Donor parent | Recurrent parent | Marker | Marker type | Reference |
---|---|---|---|---|---|
Xa21 | - | IR24 | pTA248 | STS | Ronald et al, |
Xa3, Xa4, xa5, Xa10 | IRBB3, IRBB4, IRBB5, IRBB10 | IR24 | - | RFLP, RAPD | Yoshimura et al, |
Xa4, xa5, xa13, Xa21 | IRBB4, IRBB5, IRBB13, IRBB21 | IR24 | Npb181, Npb78, RG556, RG136, pTA248 | RFLP | Huang et al, |
Xa21 | IRBB21 | Minghui 63 | 248, 21, C189, AB9 | RFLP | Chen et al, |
xa5, xa13, Xa21 | IRBB59 | IR65598-112, IR65600-42, IR65600-96 | RG556, RG207, RG136, pTA248 | STS | Sanchez et al, |
Xa21 | IRBB21 | 6078 | 21, C189, AB9 | AFLP | Chen et al, |
xa5, xa13, Xa21 | - | IR64 | - | STS, SSR | Davierwala et al, |
xa5, xa13, Xa21 | IRBB5, IRBB13, IRBB21, IRBB62 | PR106 | RG556, RG136, pTA248 | STS | Singh et al, |
xa5, xa13, Xa21 | IRBB5, IRBB13, IRBB21 | IR24 | RG556, RM122, RG136, pTA248 | STS | Ramalingam et al, |
xa5 | IRBB5 | IR64 | RG556 | CAPS | Toenniessen et al, |
xa13, Xa21 | IRBB55 | Pusa Basmati 1 | RG136, pTA248 | STS | Joseph et al, |
Xa7, Xa21 | DV85, IRBB21 | Minghui 63 | M1, M2, M3, M4, M5, pTA 248 | RAPD | Zhang et al, |
xa5, xa13, Xa21 | SS1113 | Samba Mahsuri (BPT5204) | RG556, RG136, pTA248 | STS | Sundaram et al, |
xa13, Xa21 | IRBB55 | Pusa Basmati 1 | RG136, pTA248 | STS | Gopalakrishnan et al, |
Xa4, xa5, xa13, Xa21 | NH56 | Jyothi, IR50 | G181, RG556, RG136, pTA248 | RFLP, STS | Bharathkumar et al, |
xa5, xa13, Xa21 | SS1113 | Triguna | RG556, RG136, pTA248 | STS | Sundaram et al, |
Xa23 | CBB23-2 | Luyouzhan | RM206 | SSR | Zhou et al, |
xa13, Xa21 | Pusa 1460 | Pusa RH10 | RG136, pTA248 | STS | Basavaraj et al, |
xa5, xa13, Xa21 | IRBB60 | ADT43, ADT47 | RM122, RG136, pTA248 | STS | Bharani et al, |
xa13, Xa21 | PR106-P2 | Dehraduni Basmati | RG136, pTA248 | STS | Rajpurohit et al, |
Xa21 | ISM | KMR-3R | pTA248 | STS | Hari et al, |
xa13, Xa21 | IET17948 | Basmati 370, Basmati 386 | RG136, pTA248 | STS | Bhatia et al, |
Xa4, Xa21, Xa27 | IR64, IRBB21, IRBB27 | MH725 | RM22421, pTA248, 5198 | SSR, STS, RFLP | Luo et al, |
Xa23 | CBB23 | Rongfeng B | RM206 | SSR | Fu et al, |
Xa7, Xa21, Xa22, Xa23 | Huahui 20, 96L011, CBB23 | Huahui 1035 | RM20593, pTA248, RM224, 03STS1 | Gene linked | Huang et al, |
Xa21 | IR1188 | Khao Dawk Mali 105 | PB7-PB8 | Gene specific | Win et al, |
xa5, xa13, Xa21 | IRBB60 | Tapaswini | RG556, RG136, pTA248 | STS | Dokku et al, |
Xa21, Xa27 | WH421, IRBB27 | Khao Dawk Mali 105 | 21, RMXa27 | STS, SSR | Luo and Yin, |
Xa21, xa13 | ISM | Taraori Basmati, Basmati 386 | pTA248, xa13-prom | Gene based | Pandey et al, |
xa5 | IR62266 | RD6 | RM122/RM159 | SSR | Pinta et al, |
Xa21 | Samba Mahsuri | IR58025A | pTA248 | STS | Hari et al, |
Xa4, xa5, xa13, Xa21 | IRBB60 | Mahsuri PRR78 KMR3 | Npb181, RM122, RG136, pTA248 | STS, SSR | Guvvala et al, |
xa5, Xa21, xa33 | RGDU-07097-1-8M-9 | MK-75 | PAxa5, PB7-PB8, RM7243, RM5509 | Gene specific, SSR | Win et al, |
Xa4, Xa21 | WH421 | Siputeh | RM224, 21 | SSR, STS | Luo et al, |
Xa21 | RP-Bio-Patho-2 | DRR17B | pTA248 | STS | Balachiranjeevi et al, |
Xa23 | CBB23 | Guangzhan 63S, Liangyou 6326 | C189 | EST | Ni et al, |
Xa23 | HBQ810 | Guangzhan 63-4S | M-Xa23 | InDel | Jiang et al, |
xa13, Xa21 | SPS97, Pusa 1460 | PB1121, PB6 | xa13-prom, pTA248 | Gene based | Ellur et al, |
xa13, Xa21 | ISM | MTU1010 | xa13-prom, pTA248 | Gene based | Arunakumari et al, |
Xa38 | PR114-Xa38 | PB1121 | Os04g53050-1 | Gene linked | Ellur et al, |
Xa4, xa5, Xa7, xa13, Xa21 | IRBB66 | Tainung 82, Tainung 84, Tainung 71, Tai-kang 2, Tai-kang 9, Tai-kang 16, Taoyuan 3, Tainan 110 | Xa4F/4R, RM604F/604R, Xa7F/7-1R/7-2R, Xa13F/13R, Xa21F/21R | Gene linked | Yap et al, |
xa5, xa13, Xa21 | CRMAS2232-85 | Jalmagna | Xa5S, xa5SR/R, RG136, pTA248 | STS | Pradhan et al, |
Xa21, Xa33 | RPBio Patho-1 FBR1-15 | RPHR-1005 | pTA248, RMWR7.6 | Gene linked | Abhilash Kumar et al, |
Xa21, Xa27 | Wanhui 21, IRBB27 | 9311 | 21, RMXa27 | STS, SSR | Luo et al, |
Xa21, xa13, xa5 | IRBB60 | CSR30 | pTA248, RG136, RG556 | STS | Baliyan et al, |
Xa21, xa13, xa5 | RP-Bio-226 | Dubraj, Safri 17 | Xa21, PT248-1, xa13Pro, xa5R, xa5S, RM13 | SSR | Dnyaneshwar et al, |
Gene/QTL | Donor parent | Recurrent parent | Marker | Marker type | Reference |
Xa21 | IRBB21 | LT2 | pTA248 | RFLP | Nguyen et al, |
Xa21, Xa33 | ISM, Samba Mahsuri | DRR17B | pTA248, RMWR7.6 | Gene-specific | Balachiranjeevi et al, |
Xa7 | YR7029-39 | Guangzhan 63-4S | RM20582 | SSR | Mi et al, |
xa13, Xa21 | - | CO43 | xa13-prom, pTA248 | Gene based | Krishnakumar and Kumaravadiv, |
Xa38 | PR114 | ISM | Os04g53050-1 | Gene specific | Yugander et al, |
Xa40 | IR65482-7-126-1-2 | Junam | ID55.WA3, RM1233 | STS, SSR | Reinke et al, |
Xa4, xa5, Xa21 | IRBB60 | Super Basmati | MP1, MP2, RM122, pTA248 | SSR | Sabar et al, |
Xa4, Xa21, xa5, xa13 | IRBB60 | Putra-1 | MP, RM13, RM21, xa13-prom, Xa21Fr, pTA248 | SSR | Chukwu et al, |
Xa4, xa5, Xa7, xa13, Xa21 | IRBB66 | Tainung 82 | Xa4F/4R, RM604F/604R, Xa7F/7-1R/7-2R, Xa13F/13R, Xa21F/21R | SSR | Hsu et al, |
Gene | Marker | Marker type | Donor | Recipient | Reference |
---|---|---|---|---|---|
Xa21, Piz-5 | pTA248, RG64 | STS | CO39 | IR50 | Narayanan et al, |
xa5, xa13, Xa21, fgr | RM122, xa-13-prom, pTA248, RM515 | SSR | IRBB59, IRS5441-2 | IR24 | Salgotra et al, |
Xa21, Pi54 | pTA248, RM206 | SSR | Samba Mahsuri introgression line | IR58025B | Hari et al, |
Xa4, xa5, Xa21, Pi40, Bph18 | MP1+MP2, 510603.T10Dw, 11u1+I1, 9871.T7E2b, 7312.T4A | SCAR | IRBB57, IR65482-4-136- 2-2, IR65482-7- 216-1-2 | Jinbubyeo | Suh et al, |
xa13, Xa21, Pi54 | xa13-prom, pTA248, Pi54-MAS | SSR | ISM, NLR145 | MTU1010, JGL1798 | Arunakumari et al, |
Xa21, xa13, xa5, Pi2, Pi54 | pTA248, xa13-prom, xa5DRR, RM527, Pi-54MAS | SSR | C101A51, Tetep | ISM | Ratna Madhavi et al, |
Xa21, Gm4, Gm8 | Pta 248, LRR-del, PRP | SSR | ISM1, ISM2 | RPHR-1005 | Abhilash Kumar et al, |
Xa21, Pi54 | pTA248, Pi54MAS | STS | RP-Bio-Patho-2 | DRR17B | Balachiranjeevi et al, |
xa13, Xa21, Gm1, Gm4 | xa13-prom, pTA248, RM1328, RM22550 | SSR | B95-1 × Kavya, B95-1 × Tetep, B95-1 × Abhaya | CO43 | Krishnakumar and Kumaravadiv, |
Xa7, Pi2 | RM20582, RM527 | SNP | Hua 1228S | Guangzhan 63-4S | Mi et al, |
Xa21, xa13, xa5, Pi-2, Pi-54 | pTA248, xa13-prom, xa5FM AP5659-5, Pi54MAS | SSR | RPBio patho-1, RPBio patho-2 | ISM | Rekha et al, |
Xa21, Bph14, Bph15 | pTA248, Bph14P/N, MS5 | SSR | Y58S/Hua 15 | Yuehui 9113 | He et al, |
Xa4, xa5, xa13, Xa21, Sub1 | MP-Nbp-131, RM122, xa13-prom, pTA248, Sub1-A203 | SSR | IRBB60 | Swarna Sub 1 | Pradhan et al, |
xa13, Xa21, sd1 | xa13-prom, pTA248, h | SSR | PAU148 | Ranbir Basmati | Raina et al, |
Xa4, xa5, xa13, Xa21, Gm4, Gm8, Bph3, Bph17, Pi9 | Xa4, xa5DRR, xa13-prom, pTA248, Gm4LRR, Gm8PRP, RM586, RM8213, Pi9STS2 | SSR | IRBB60, Abhaya, Aganni, Rathu Heenati, IRBL9 | Swarna | Dixit et al, |
Xa7, Sub1, BPH | RM20589, RM20590, Xa7-LD34 | SSR | Conde | Inpara 5, Inpari 13 | Hairmansis et al, |
xa13, Xa21, Pi2, Pi54 | xa13-prom, pTA248A, P5930, RM206 | SSR | Pusa 1790 | Pusa Basmati 1509 | Sagar et al, |
Xa21, Pi9, Sub1A, tms5 | pTA28, NBS2-1, RM23887, S2-24 | STS, SSR | T4105 | 1892S | Luo et al, |
Table 4. Successful examples of marker-assisted breeding for blight disease along with other traits in rice.
Gene | Marker | Marker type | Donor | Recipient | Reference |
---|---|---|---|---|---|
Xa21, Piz-5 | pTA248, RG64 | STS | CO39 | IR50 | Narayanan et al, |
xa5, xa13, Xa21, fgr | RM122, xa-13-prom, pTA248, RM515 | SSR | IRBB59, IRS5441-2 | IR24 | Salgotra et al, |
Xa21, Pi54 | pTA248, RM206 | SSR | Samba Mahsuri introgression line | IR58025B | Hari et al, |
Xa4, xa5, Xa21, Pi40, Bph18 | MP1+MP2, 510603.T10Dw, 11u1+I1, 9871.T7E2b, 7312.T4A | SCAR | IRBB57, IR65482-4-136- 2-2, IR65482-7- 216-1-2 | Jinbubyeo | Suh et al, |
xa13, Xa21, Pi54 | xa13-prom, pTA248, Pi54-MAS | SSR | ISM, NLR145 | MTU1010, JGL1798 | Arunakumari et al, |
Xa21, xa13, xa5, Pi2, Pi54 | pTA248, xa13-prom, xa5DRR, RM527, Pi-54MAS | SSR | C101A51, Tetep | ISM | Ratna Madhavi et al, |
Xa21, Gm4, Gm8 | Pta 248, LRR-del, PRP | SSR | ISM1, ISM2 | RPHR-1005 | Abhilash Kumar et al, |
Xa21, Pi54 | pTA248, Pi54MAS | STS | RP-Bio-Patho-2 | DRR17B | Balachiranjeevi et al, |
xa13, Xa21, Gm1, Gm4 | xa13-prom, pTA248, RM1328, RM22550 | SSR | B95-1 × Kavya, B95-1 × Tetep, B95-1 × Abhaya | CO43 | Krishnakumar and Kumaravadiv, |
Xa7, Pi2 | RM20582, RM527 | SNP | Hua 1228S | Guangzhan 63-4S | Mi et al, |
Xa21, xa13, xa5, Pi-2, Pi-54 | pTA248, xa13-prom, xa5FM AP5659-5, Pi54MAS | SSR | RPBio patho-1, RPBio patho-2 | ISM | Rekha et al, |
Xa21, Bph14, Bph15 | pTA248, Bph14P/N, MS5 | SSR | Y58S/Hua 15 | Yuehui 9113 | He et al, |
Xa4, xa5, xa13, Xa21, Sub1 | MP-Nbp-131, RM122, xa13-prom, pTA248, Sub1-A203 | SSR | IRBB60 | Swarna Sub 1 | Pradhan et al, |
xa13, Xa21, sd1 | xa13-prom, pTA248, h | SSR | PAU148 | Ranbir Basmati | Raina et al, |
Xa4, xa5, xa13, Xa21, Gm4, Gm8, Bph3, Bph17, Pi9 | Xa4, xa5DRR, xa13-prom, pTA248, Gm4LRR, Gm8PRP, RM586, RM8213, Pi9STS2 | SSR | IRBB60, Abhaya, Aganni, Rathu Heenati, IRBL9 | Swarna | Dixit et al, |
Xa7, Sub1, BPH | RM20589, RM20590, Xa7-LD34 | SSR | Conde | Inpara 5, Inpari 13 | Hairmansis et al, |
xa13, Xa21, Pi2, Pi54 | xa13-prom, pTA248A, P5930, RM206 | SSR | Pusa 1790 | Pusa Basmati 1509 | Sagar et al, |
Xa21, Pi9, Sub1A, tms5 | pTA28, NBS2-1, RM23887, S2-24 | STS, SSR | T4105 | 1892S | Luo et al, |
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