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Phytochrome Signalling in Rice Immunity: Mechanisms, Trade-Offs, and Translational Opportunities

  1. Graduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; State Key Laboratory of Elemento-Organic Chemistry and Department of Plant Protection, National Pesticide Engineering Research Center (Tianjin), Nankai University, Tianjin 300071 China; Plant Breeding Division, Bangladesh Rice Research Institute, Gazipur-1701, Bangladesh; These authors contributed equally to this work
  • Contact: Jong-Seong JEON; XUAN Yuanhu
  • Supported by:
    This study was supported by grants from the National Natural Science Foundation of China (Grant No. 32372482), the National Research Foundation of the Republic of Korea (Grant Nos. 2023R1A2C1003142 and RS-2024-00440478), and the Rural Development Administration of the Republic of Korea (Grant Nos. RS-2024-00322378 and RS-2025-02223622).

Abstract:

 Light is a major environmental signal that regulates plant growth, development, and stress responses. Phytochromes are red/far-red light photoreceptors that integrate environmental light cues with transcriptional, hormonal, and physiological programs related to immunity and agronomic performance. Although most knowledge of phytochrome function comes from work on Arabidopsis thaliana and rice (Oryza sativa), and species-specific evidence remains limited, recent studies have expanded our understanding of rice phytochrome functions beyond photomorphogenesis. For example, phytochrome B (OsphyB) contributes to blast resistance and affects yield-related traits, while PHYTOCHROME-INTERACTING FACTOR-LIKE proteins (OsPILs) connect light perception with defence, sugar allocation, tillering, and grain development. In this review, we summarize the rice phytochrome system and evaluate evidence linking phytochrome signalling to phytohormone-associated defence, reactive oxygen species signalling, calcium signalling, circadian regulation, and plant responses to light quality and temperature. We highlight recent mechanistic advances involving OsphyB-mediated tiller development and OsPIL15-dependent links among light signalling, immunity, and yield-related traits. These advances provide a framework for understanding how light signalling coordinates disease resistance with developmental and yield-related traits. We also discuss prospects for phytochrome-based breeding and genome editing, as well as questions that must be resolved before these strategies can be deployed in the field. Collectively, the available evidence positions phytochrome signalling as an emerging framework for understanding the coordination of immunity, development, and environmental acclimation in rice.

Key words: environmental signalling, growth-defence coordination, immunity, OsphyB, phytochrome, rice