Rice Science ›› 2022, Vol. 29 ›› Issue (4): 375-384.DOI: 10.1016/j.rsci.2021.11.007
• Research Paper • Previous Articles Next Articles
Suhas Gorakh Karkute1, Vishesh Kumar1, Mohd Tasleem1, Dwijesh Chandra Mishra2, Krishna Kumar Chaturvedi2, Anil Rai2, Amitha Mithra Sevanthi1, Kishor Gaikwad1, Tilak Raj Sharma3, Amolkumar U. Solanke1()
Received:
2021-08-11
Accepted:
2021-11-12
Online:
2022-07-28
Published:
2021-12-31
Contact:
Amolkumar U. Solanke
Suhas Gorakh Karkute, Vishesh Kumar, Mohd Tasleem, Dwijesh Chandra Mishra, Krishna Kumar Chaturvedi, Anil Rai, Amitha Mithra Sevanthi, Kishor Gaikwad, Tilak Raj Sharma, Amolkumar U. Solanke. Genome-Wide Analysis of von Willebrand Factor A Gene Family in Rice for Its Role in Imparting Biotic Stress Resistance with Emphasis on Rice Blast Disease[J]. Rice Science, 2022, 29(4): 375-384.
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Fig. 2. Evolutionary relationship of vWA proteins (A) and promoter sequence of vWA genes (B) in rice. Different colored squares in A represent proteins in different subclades. Blue triangle and red square in B represent promoters from blast resistant variety Tetep (Tet) and susceptible variety Nipponbare (Nip), respectively. The evolutionary history was inferred using the neighbor-joining method. The evolutionary distances were computed using the Poisson correction method.
Fig. 3. Relative expression analysis of OsvWA genes in rice panicle tissues of Tetep and HP2216 genotypes inoculated with M. oryzae at 48 h post inoculation using qRT-PCR.
[1] |
Balint-Kurti P. 2019. The plant hypersensitive response: Concepts, control and consequences. Mol Plant Pathol, 20(8): 1163-1178.
PMID |
[2] |
Bharati K P, Prashanth U R. 2011. Von Willebrand disease: An overview. Indian J Pharm Sci, 73(1): 7-16.
PMID |
[3] | Chen X L, Jia Y L, Wu B M. 2019. Evaluation of rice responses to the blast fungus Magnaporthe oryzae at different growth stages. Plant Dis, 103(1): 132-136. |
[4] | Edgar R C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res, 32(5): 1792-1797. |
[5] | Fang N Y, Wei X R, Shen L T, Yu Y, Li M Y, Yin C F, He W W, Guan C H, Chen H, Zhang H S, Bao Y M. 2019. Fine mapping of a panicle blast resistance gene Pb-bd1 in japonica landrace Bodao and its application in rice breeding. Rice, 12(1): 18. |
[6] |
Freemont P S. 2000. Ubiquitination: RING for destruction? Curr Biol, 10(2): R84-R87.
PMID |
[7] |
Hirose N, Makita N, Kojima M, Kamada-Nobusada T, Sakakibara H. 2007. Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Plant Cell Physiol, 48(3): 523-539.
PMID |
[8] |
Horton P, Park K J, Obayashi T, Fujita N, Harada H, Adams-Collier C J, Nakai K. 2007. WoLF PSORT: Protein localization predictor. Nucleic Acids Res, 35: W585-W587.
PMID |
[9] | Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P. 2008. Genevestigator v3: A reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics, 2008: 420747. |
[10] | Kazan K. 2017. The multitalented MEDIATOR25. Front Plant Sci, 8: 999. |
[11] |
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones S J, Marra M A. 2009. Circos: An information aesthetic for comparative genomics. Genome Res, 19(9): 1639-1645.
PMID |
[12] | Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol, 33(7): 1870-1874. |
[13] | Kumar V, Jain P, Venkadesan S, Karkute S G, Bhati J, Abdin M Z, Sevanthi A M, Mishra D C, Chaturvedi K K, Rai A, Sharma T R, Solanke A U. 2021. Understanding rice: Magnaporthe oryzae interaction in resistant and susceptible cultivars of rice under panicle blast infection using a time-course transcriptome analysis. Genes, 12(2): 301. |
[14] | Li W T, Chern M, Yin J J, Wang J, Chen X W. 2019. Recent advances in broad-spectrum resistance to the rice blast disease. Curr Opin Plant Biol, 50: 114-120. |
[15] | Liu J X, Jambunathan N, McNellis T W. 2005. Transgenic expression of the von Willebrand A domain of the BONZAI 1/ COPINE 1 protein triggers a lesion-mimic phenotype in Arabidopsis. Planta, 221(1): 85-94. |
[16] | Liu Z, Wang T Z, Wang L, Zhao H, Yue E K, Yan Y, Irshad F, Zhou L, Duan M H, Xu J H. 2020. RTRIP: A comprehensive profile of transposon insertion polymorphisms in rice. Plant Biotechnol J, 18(12): 2379-2381. |
[17] |
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods, 25(4): 402-408.
PMID |
[18] | Polo S, Sigismund S, Faretta M, Guidi M, Capua M R, Bossi G, Chen H, de Camilli P, Di Fiore P P. 2002. A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins. Nature, 416: 451-455. |
[19] | Rawat N, Naga N C, Meenakshi S R, Nair S, Bentur J S. 2012. A novel mechanism of gall midge resistance in the rice variety Kavya revealed by microarray analysis. Funct Integr Genomics, 12(2): 249-264. |
[20] | Reininger A J. 2008. Function of von Willebrand factor in haemostasis and thrombosis. Haemophilia, 14: 11-26. |
[21] | Sandhu M, Sureshkumar V, Prakash C, Dixit R, Solanke A U, Sharma T R, Mohapatra T, Sv A M. 2017. RiceMetaSys for salt and drought stress responsive genes in rice: A web interface for crop improvement. BMC Bioinformatics, 18(1): 432. |
[22] | Sureshkumar V, Dutta B, Kumar V, Prakash G, Mishra D C, Chaturvedi K K, Rai A, Sevanthi A M, Solanke A U. 2019. RiceMetaSysB: A database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes. Database, 2019: baz015. |
[23] | Swarbrick P J, Huang K, Liu G, Slate J, Press M C, Scholes J D. 2008. Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica. New Phytol, 179(2): 515-529. |
[24] | Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller L A, Rhee S Y, Stitt M. 2004. MAPMAN: A user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J, 37(6): 914-939. |
[25] | Tuckwell D. 1999. Evolution of von Willebrand factor A (VWA) domains. Biochem Soc Trans, 27(6): 835-840. |
[26] |
Voorrips R E. 2002. MapChart: Software for the graphical presentation of linkage maps and QTLs. J Hered, 93(1): 77-78.
PMID |
[27] | Wang L, Zhao L N, Zhang X H, Zhang Q J, Jia Y X, Wang G, Li S M, Tian D C, Li W H, Yang S H. 2019. Large-scale identification and functional analysis of NLR genes in blast resistance in the Tetep rice genome sequence. Proc Natl Acad Sci USA, 116(37): 18479-18487. |
[28] |
Whittaker C A, Hynes R O. 2002. Distribution and evolution of von Willebrand/integrin A domains: Widely dispersed domains with roles in cell adhesion and elsewhere. Mol Biol Cell, 13(10): 3369-3387.
PMID |
[29] | Yang S H, Yang H J, Grisafi P, Sanchatjate S, Fink G R, Sun Q, Hua J. 2006. The BON/CPN gene family represses cell death and promotes cell growth in Arabidopsis. Plant J, 45(2): 166-179. |
[30] | Yin X, Zou B H, Hong X X, Gao M J, Yang W B, Zhong X B, He Y, Kuai P, Lou Y G, Huang J R, Hua J, He Z H. 2018. Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance. Plant Biotechnol J, 16(8): 1476-1487. |
[31] | Yu J, Wang J, Lin W, Li S G, Li H, Zhou J, Ni P X, Dong W, Hu S N, Zeng C Q, Zhang J G, Zhang Y, Li R Q, Xu Z Y, Li S T, Li X R, Zheng H K, Cong L J, Lin L, Yin J N, Geng J N, Li G Y, Shi J P, Liu J, Lv H, Li J, Wang J, Deng Y J, Ran L H, Shi X L, Wang X Y, Wu Q F, Li C F, Ren X Y, Wang J Q, Wang X L, Li D W, Liu D Y, Zhang X W, Ji Z D, Zhao W M, Sun Y Q, Zhang Z P, Bao J Y, Han Y J, Dong L L, Ji J, Chen P, Wu S M, Liu J S, Xiao Y, Bu D B, Tan J L, Yang L, Ye C, Zhang J F, Xu J Y, Zhou Y, Yu Y P, Zhang B, Zhuang S L, Wei H B, Liu B, Lei M, Yu H, Li Y Z, Xu H, Wei S L, He X M, Fang L J, Zhang Z J, Zhang Y Z, Huang X G, Su Z X, Tong W, Li J H, Tong Z Z, Li S L, Ye J, Wang L S, Fang L, Lei T T, Chen C, Chen H, Xu Z, Li H H, Huang H Y, Zhang F, Xu H Y, Li N, Zhao C F, Li S T, Dong L J, Huang Y Q, Li L, Xi Y, Qi Q H, Li W J, Zhang B, Hu W, Zhang Y L, Tian X J, Jiao Y Z, Liang X H, Jin J, Gao L, Zheng W M, Hao B L, Liu S Q, Wang W, Yuan L P, Cao M L, McDermott J, Samudrala R, Wang J, Wong G K S, Yang H M. 2005. The genomes of Oryza sativa: A history of duplications. PLoS Biol, 3(2): e38. |
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