Understanding Brown Planthopper Resistance in Rice: Genetics, Biochemical and Molecular Breeding Approaches

doi:10.1016/j.rsci.2021.05.013

Abstract

Abstract:

Brown planthopper (BPH, Nilaparvata lugens Stål) is the most devastating pest of rice in Asia and causes significant yield loss annually. Around 37 BPH resistance genes have been identified so far in indica, African rice varieties along with wild germplasms such as Oryza officinalis, O. minuta, O. nivara, O. punctata, O. rufipogon and O. latifolia. Genes/QTLs involved in BPH resistance, including Bph1, bph2/BPH26, Bph3, Bph6, bph7, BPH9, Bph12, Bph14, Bph15, Bph17, BPH18, bph19, Bph20, Bph21(t), Bph27, Bph27(t), Bph28(t), BPH29, QBph3, QBph4, QBph4.2, Bph30, Bph32, Bph33, Bph35 and Bph36, have been fine-mapped by different researchers across the globe. The majority of genes/QTLs are located on rice chromosomes 1, 3, 4, 6, 11 and 12. Rice plants respond to BPH attack by releasing various endogenous metabolites like proteinase inhibitors, callose, secondary metabolites (terpenes, alkaloids, flavonoid, etc.) and volatile compounds. Besides that, hormonal signal pathways mediating (antagonistic/synergistic) resistance responses in rice have been well studied. Marker-assisted breeding and genome editing techniques can also be adopted for improving resistance to novel BPH biotypes.

Key words: rice, brown planthopper, resistance, wild germplasm, marker-assisted breeding, genome editing, secondary metabolite

Muduli Lakesh, Kumar Pradhan Sukanta, Mishra Abinash, Nath Bastia Debendra, Chandra Samal Kailash, Kumar Agrawal Pawan, Dash Manasi. Understanding Brown Planthopper Resistance in Rice: Genetics, Biochemical and Molecular Breeding Approaches[J]. Rice Science, 2021, 28(6): 532-546.

Figures/Tables 3

References 109

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Chr	Gene	Flanking marker	Location (Mb)	Germplasm source	Resistant to biotype	Reference
1	Bph33(t)	RM488, RM11522	24.80-28.00	RP2068	ND	Naik et al, 2018
1L	BPH38(t)	SNPs 693, 369, 10, 112, 165	20.71-21.23	Khazar	Biotype 3	Balachiranjeevi et al, 2019
1	BPH37	RM302, YM35	ND	IR64	ND	Yang et al, 2019
3	bph11	ND	35.60-35.80	O. officinalis	ND	Hirabayashi et al, 1998
3S	Bph13(t)	AJ09b230, AJ09c	5.18-5.70	IR54745-2-21 (O. officinalis)	Biotypes 1, 2, 3 and 4	Renganayaki et al, 2002
3S	bph19	RM6308, RM3134	7.18-7.24	AS20-1	Biotype 2	Chen et al, 2006
3	qBph3	RM3180, RM2453	18.27-20.25	Rathu Heenati	ND	Kumari et al, 2010
3L	BPH31	PA26, RM2334	26.26-26.74	CR2711-76 (indica)	Biotype 4	Prahalada et al, 2017
4S	Bph12	RM16459, RM1305	5.21-5.66	B14 (O. latifolia)	ND	Qiu et al, 2012
4S	Bph15	RM261, S16	6.68-6.90	B5 (O. officinalis)	ND	Lü et al, 2014
4S	QBph4.1	P17, xc4-27	6.70-6.90	IR02W101 (O. officinalis)	ND	Hu et al, 2015b
4S	QBph4.2	RM261, S1	6.58-6.89	IR65482-17-511 (O. australiensis)	ND	Hu et al, 2015a
4S	Bph17	RM8213, RM5953	6.93-6.97	Rathu Heenati	ND	Sun et al, 2005
4S	Bph20(t)	MS10, RM5953	8.20-9.60	IR71033-121-15 (O. minuta)	ND	Rahman et al, 2009
4S	Bph30	RM16294, RM16299	0.90-0.94	AC-1613 (O. indica)	Biotypes 1, 2 and 3	Wang et al, 2018
4S	Bph33	H99, H101	0.91-0.97	Kolayal and Poliyal	ND	Hu et al, 2018
4S	Bph36	S13, X48	ND	O. rufipogon Griff	Biotypes 1 and 2	Li et al, 2019
4S	Bph12	RM16459, RM1305	5.21-5.66	B14 (O. latifolia)	Biotype 2	Qiu et al, 2012
4L	Bph6	Y19, RM119	21.36-21.39	Swarnalata	Biotype 4	Qiu et al, 2010
4L	Bph34	RM16994, RM17007	21.15-21.30	IRGC104646 (O. nivara)	Biotype 4	Kumar et al, 2018
4L	Bph27	RM273, RM471	19.12-19.20	GX2183 (O. rufipogon)	Biotype 2	Huang et al, 2013
4L	Bph27(t)	RM471, RM5742	20.79-21.33	Balamawee	ND	He et al, 2013
4L	Bph35	PSM16, RM413	6.28-6.93	RBPH660	ND	Zhang et al, 2020
6S	Bph3	RM469, RM588	1.21-1.40	Rathu Heenati	Biotypes 1, 2, 3 and 4	Jairin et al, 2007
6S	bph4	RM190, C76A	1.20-1.76	Babawee	Biotypes 1, 2, 3 and 4	Kawaguchi et al, 2001
6S	BPH25	S00310	0.20-1.71	ADR52	ND	Myint et al, 2012
6S	BPH29	BYL7, BID2	0.48-0.49	RBPH54 (O. rufipogon)	Biotypes 1 and 2	Wang et al, 2015
6S	Bph32	RM19291, RM8072	1.21-1.40	Ptb33	ND	Ren et al, 2016
11L	Bph28(t)	Indel55, Indel66	ND	DV85	ND	Wu et al, 2014
12	BPH10	RM260, RM313	19.00-23.00	O. australiensis	ND	Ishii et al, 1994
12	Bph1	BpE18-3	13.10-13.28	Mudgo, TKM6	Biotypes 1 and 3	Kim and Sohn, 2005
12L	bph2/Bph26	KAM4	22.13-23.18	IR1154-243	Biotypes 1 and 2	Murai et al, 2001
12L	bph2	RM463, RM7102	13.21-22.13	ASD7	ND	Sun et al, 2007
12L	bph7	RM3448, RM313	19.95-20.87	T12	Biotype 4	Qiu et al, 2014
12L	BPH9	RM463, RM5341	19.11-22.13	Kaharamana	Biotypes 1, 2 and 3	Su et al, 2006
12L	BPH9	OPR04, S2545	19.00-22.50	Pokkali	ND	Murata et al, 2001
12L	BPH18(t)	RM463, S15552, 7312.T4A	22.25-23.48	IR65482-7-216 (O. australiensis)	Biotypes 1, 2, 3 and 4	Jena et al, 2006
12L	Bph21(t)	RM3726, RM5479	23.28-24.41	IR71033-121-15 (O. minuta)	Biotype 1	Rahman et al, 2009

Chr	Gene	Flanking marker	Location (Mb)	Germplasm source	Resistant to biotype	Reference
1	Bph33(t)	RM488, RM11522	24.80-28.00	RP2068	ND	Naik et al, 2018
1L	BPH38(t)	SNPs 693, 369, 10, 112, 165	20.71-21.23	Khazar	Biotype 3	Balachiranjeevi et al, 2019
1	BPH37	RM302, YM35	ND	IR64	ND	Yang et al, 2019
3	bph11	ND	35.60-35.80	O. officinalis	ND	Hirabayashi et al, 1998
3S	Bph13(t)	AJ09b230, AJ09c	5.18-5.70	IR54745-2-21 (O. officinalis)	Biotypes 1, 2, 3 and 4	Renganayaki et al, 2002
3S	bph19	RM6308, RM3134	7.18-7.24	AS20-1	Biotype 2	Chen et al, 2006
3	qBph3	RM3180, RM2453	18.27-20.25	Rathu Heenati	ND	Kumari et al, 2010
3L	BPH31	PA26, RM2334	26.26-26.74	CR2711-76 (indica)	Biotype 4	Prahalada et al, 2017
4S	Bph12	RM16459, RM1305	5.21-5.66	B14 (O. latifolia)	ND	Qiu et al, 2012
4S	Bph15	RM261, S16	6.68-6.90	B5 (O. officinalis)	ND	Lü et al, 2014
4S	QBph4.1	P17, xc4-27	6.70-6.90	IR02W101 (O. officinalis)	ND	Hu et al, 2015b
4S	QBph4.2	RM261, S1	6.58-6.89	IR65482-17-511 (O. australiensis)	ND	Hu et al, 2015a
4S	Bph17	RM8213, RM5953	6.93-6.97	Rathu Heenati	ND	Sun et al, 2005
4S	Bph20(t)	MS10, RM5953	8.20-9.60	IR71033-121-15 (O. minuta)	ND	Rahman et al, 2009
4S	Bph30	RM16294, RM16299	0.90-0.94	AC-1613 (O. indica)	Biotypes 1, 2 and 3	Wang et al, 2018
4S	Bph33	H99, H101	0.91-0.97	Kolayal and Poliyal	ND	Hu et al, 2018
4S	Bph36	S13, X48	ND	O. rufipogon Griff	Biotypes 1 and 2	Li et al, 2019
4S	Bph12	RM16459, RM1305	5.21-5.66	B14 (O. latifolia)	Biotype 2	Qiu et al, 2012
4L	Bph6	Y19, RM119	21.36-21.39	Swarnalata	Biotype 4	Qiu et al, 2010
4L	Bph34	RM16994, RM17007	21.15-21.30	IRGC104646 (O. nivara)	Biotype 4	Kumar et al, 2018
4L	Bph27	RM273, RM471	19.12-19.20	GX2183 (O. rufipogon)	Biotype 2	Huang et al, 2013
4L	Bph27(t)	RM471, RM5742	20.79-21.33	Balamawee	ND	He et al, 2013
4L	Bph35	PSM16, RM413	6.28-6.93	RBPH660	ND	Zhang et al, 2020
6S	Bph3	RM469, RM588	1.21-1.40	Rathu Heenati	Biotypes 1, 2, 3 and 4	Jairin et al, 2007
6S	bph4	RM190, C76A	1.20-1.76	Babawee	Biotypes 1, 2, 3 and 4	Kawaguchi et al, 2001
6S	BPH25	S00310	0.20-1.71	ADR52	ND	Myint et al, 2012
6S	BPH29	BYL7, BID2	0.48-0.49	RBPH54 (O. rufipogon)	Biotypes 1 and 2	Wang et al, 2015
6S	Bph32	RM19291, RM8072	1.21-1.40	Ptb33	ND	Ren et al, 2016
11L	Bph28(t)	Indel55, Indel66	ND	DV85	ND	Wu et al, 2014
12	BPH10	RM260, RM313	19.00-23.00	O. australiensis	ND	Ishii et al, 1994
12	Bph1	BpE18-3	13.10-13.28	Mudgo, TKM6	Biotypes 1 and 3	Kim and Sohn, 2005
12L	bph2/Bph26	KAM4	22.13-23.18	IR1154-243	Biotypes 1 and 2	Murai et al, 2001
12L	bph2	RM463, RM7102	13.21-22.13	ASD7	ND	Sun et al, 2007
12L	bph7	RM3448, RM313	19.95-20.87	T12	Biotype 4	Qiu et al, 2014
12L	BPH9	RM463, RM5341	19.11-22.13	Kaharamana	Biotypes 1, 2 and 3	Su et al, 2006
12L	BPH9	OPR04, S2545	19.00-22.50	Pokkali	ND	Murata et al, 2001
12L	BPH18(t)	RM463, S15552, 7312.T4A	22.25-23.48	IR65482-7-216 (O. australiensis)	Biotypes 1, 2, 3 and 4	Jena et al, 2006
12L	Bph21(t)	RM3726, RM5479	23.28-24.41	IR71033-121-15 (O. minuta)	Biotype 1	Rahman et al, 2009

Gene	Chr	Candidate locus	Encoded protein	Germplasm source	Defense signalling pathway	Reference
Bph3	4	OsLecRK1-OsLecRK3	Lectin receptor kinases	Rathu Heenati	-	Liu et al, 2015
Bph6	4	Gene1 (NCBI accession KX818197)	Atypical LRR	Swarnalata	JA↑, SA↑, CK↑ (Synergistic)	Guo et al, 2018
BPH9	12	R₂	CC-NBS-NBS-LRR	Pokkali	JA↑, SA↓ (Antagonistic)	Zhao et al, 2016
Bph14	3	Ra (Os03g0848700)	CC-NB-LRR	B5	SA↑	Du et al, 2009
Bph15	4	LOC_Os04g12390, LOC_Os04g12460	LRR and JRL	B5	DEGs↑	Lü et al, 2014
BPH18	12	LOC_Os12g37280, LOC_Os12g37290	CC-NBS-NBS-LRR	IR65482-7-216-1-2	-	Ji et al, 2016
BPH26	12	Os12g0559300, Os12g0559400, Os12g0559600	CC-NB-LRR	ADR52	JA↑, SA↑, ET↑, PR1b↑	Tamura et al, 2014
BPH29	6	G5 (Os06g0107800)	B3 DNA-binding domain	RBPH54	JA↓, SA↑ (Antagonistic)	Wang et al, 2015
Bph32	6	Os06g123200	Unknown SCR domain	PTB33	-	Ren et al, 2016

Gene	Chr	Candidate locus	Encoded protein	Germplasm source	Defense signalling pathway	Reference
Bph3	4	OsLecRK1-OsLecRK3	Lectin receptor kinases	Rathu Heenati	-	Liu et al, 2015
Bph6	4	Gene1 (NCBI accession KX818197)	Atypical LRR	Swarnalata	JA↑, SA↑, CK↑ (Synergistic)	Guo et al, 2018
BPH9	12	R₂	CC-NBS-NBS-LRR	Pokkali	JA↑, SA↓ (Antagonistic)	Zhao et al, 2016
Bph14	3	Ra (Os03g0848700)	CC-NB-LRR	B5	SA↑	Du et al, 2009
Bph15	4	LOC_Os04g12390, LOC_Os04g12460	LRR and JRL	B5	DEGs↑	Lü et al, 2014
BPH18	12	LOC_Os12g37280, LOC_Os12g37290	CC-NBS-NBS-LRR	IR65482-7-216-1-2	-	Ji et al, 2016
BPH26	12	Os12g0559300, Os12g0559400, Os12g0559600	CC-NB-LRR	ADR52	JA↑, SA↑, ET↑, PR1b↑	Tamura et al, 2014
BPH29	6	G5 (Os06g0107800)	B3 DNA-binding domain	RBPH54	JA↓, SA↑ (Antagonistic)	Wang et al, 2015
Bph32	6	Os06g123200	Unknown SCR domain	PTB33	-	Ren et al, 2016