Top Downloaded

    Published in last 1 year| In last 2 years| In last 3 years| All| Most Downloaded in Recent Month | Most Downloaded in Recent Year|

    Published in last 1 year
    Please wait a minute...
    For Selected: Toggle Thumbnails
    Random Amplification Polymorphic DNA and Agro-Morphological Traits-Based Fingerprinting for Detection of Genetic Divergence in Indian Black Rice
    Manisha Sharma, Dhananjay Raturi, Vijay Rani Rajpal, Manju Chaudhary, Soom Nath Raina, Apekshita Singh
    Rice Science    2024, 31 (4): 366-370.   DOI: 10.1016/j.rsci.2024.03.002
    Abstract126)   HTML15)    PDF (1687KB)(915)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Response of Rice Growth and Nutrient Absorption in a Saline- Alkali Paddy to Different Nitrogen Fertilizer Applications
    Wang Xinyi, Zhu Hui, Yan Baixing, Brian Shutes, Zeng Yuan
    Rice Science    2024, 31 (3): 245-250.   DOI: 10.1016/j.rsci.2024.03.001
    Abstract157)   HTML22)    PDF (28015KB)(879)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Seed Storability in Rice: Physiological Foundations, Molecular Mechanisms, and Applications in Breeding
    Zhou Tianshun, Yu Dong, Wu Liubing, Xu Yusheng, Duan Meijuan, Yuan Dingyang
    Rice Science    2024, 31 (4): 401-416.   DOI: 10.1016/j.rsci.2024.02.011
    Abstract205)   HTML5)    PDF (4301KB)(759)       Save

    Long-term storage of crop seeds is critical for the conservation of germplasm resources, ensuring food supply, and supporting sustainable production. Rice, as a major food staple, has a substantial stock for consumption and production worldwide. However, its food value and seed viability tend to decline during storage. Understanding the physiological responses and molecular mechanisms of aging tolerance forms the basis for enhancing seed storability in rice. This review outlines the latest progress in influential factors, evaluation methods, and identification indices of seed storability. It also discusses the physiological consequences, molecular mechanisms, and strategies for breeding aging-tolerant rice in detail. Finally, it highlights challenges in seed storability research that require future attention. This review offers a theoretical foundation and research direction for uncovering the mechanisms behind seed storability and breeding aging-tolerant rice.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Putrescine Modulates Cadmium Fixation Ability of Cell Wall to Decrease Cadmium Accumulation in Rice, a Process Might Depend on Nitric Oxide
    Wang Haoyu, Li Su, Yang Jibo, Huang Jing, Zhu Xiaofang, Shen Renfang, Zeng Dali
    Rice Science    2024, 31 (3): 237-240.   DOI: 10.1016/j.rsci.2023.11.009
    Abstract237)   HTML159)    PDF (26751KB)(734)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Effects of Biochar Inoculation with Bacillus megaterium on Rice Soil Phosphorus Fraction Transformation and Bacterial Community Dynamics
    Yu Keru, Xue Zhaokun, Fang Xianzhi, Ma Jiawei, Wang Yongjun, Liu Dan, Ye Zhengqian
    Rice Science    2024, 31 (4): 361-365.   DOI: 10.1016/j.rsci.2024.04.003
    Abstract163)   HTML68)    PDF (831KB)(726)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Salinity Stress Deteriorates Grain Yield and Increases 2-Acetyl-1-Pyrroline Content in Rice
    Wei Huanhe, Ma Weiyi, Zhang Xiang, Zuo Boyuan, Geng Xiaoyu, Wang Lulu, Zhu Wang, Chen Yinglong, Huo Zhongyang, Xu Ke, Meng Tianyao, Dai Qigen
    Rice Science    2024, 31 (4): 371-374.   DOI: 10.1016/j.rsci.2024.02.010
    Abstract176)   HTML25)    PDF (2585KB)(707)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Direct-Seeded Rice: Genetic Improvement of Game-Changing Traits for Better Adaption
    Priyanka Negi, Jagadish Rane, Rajendra Sadashiv Wagh, Tukaram Jayaram Bhor, Dipti Digambar Godse, Priyanka Jadhav, C. Anilkumar, Dasari Sreekanth, K. Sammi Reddy, Sharad Ramrao Gadakh, K. M. Boraih, C. B. Harisha, P. S. Basavaraj
    Rice Science    2024, 31 (4): 417-433.   DOI: 10.1016/j.rsci.2024.04.006
    Abstract186)   HTML9)    PDF (3780KB)(705)       Save

    The sustainability of rice production continues to be a subject of uncertainty and inquiry attributed to shifts in climatic conditions. In light of the impending climate change crisis and the high labor and water costs accompanying it, direct-seeded rice (DSR) is unquestionably one of the most practical solutions. Despite its resource and climate-friendly advantages, early maturing rice faces weed competitiveness and seedling establishment challenges. Resolving these issues is crucial for promoting its wider adoption among farmers, presenting it as a more effective sustainable rice cultivation method globally. Diverse traditional and contemporary breeding methods are employed to mitigate the limitations of the DSR approach, leveraging advanced techniques such as speed breeding and genome editing. Focusing on key traits like mesocotyl length elongation, early seedling vigor, root system architecture, and weed competitiveness holds promise for transformative improvements in DSR adaptation at a broader scale within farming communities. This review aims to summarize how these features contribute to increased crop production in DSR conditions and explore the research efforts focusing on enhancing DSR adaptation through these traits. Emphasizing the pivotal role of these game-changing traits in DSR adaptation, our analysis sheds light on their potential transformative impact and offers valuable insights for advancing DSR practices.

    Table and Figures | Reference | Related Articles | Metrics | Comments0
    Interaction Between Ustilaginoidea virens and Rice and Its Sustainable Control
    Zhang Fengmin, Cao Zhenzhen, Zheng Xin, He Yuntao, Chen Mingxue, Lin Xiaoyan
    Rice Science    2024, 31 (3): 269-284.   DOI: 10.1016/j.rsci.2023.11.012
    Abstract135)   HTML10)    PDF (26757KB)(620)       Save

    Ustilaginoidea virens is a common rice pathogen that can easily lead to a decline in rice quality and the production of toxins pose potential risks to human health. In this review, we present a comprehensive literature review of research since the discovery of rice false smut. We provide a comprehensive and, at times, critical overview of the main results and findings from related research, and propose future research directions. Firstly, we delve into the interaction between U. virens and rice, including the regulation of transcription factors, the process of U. virens infecting rice panicles, and the plant immune response caused by rice infection. Following that, we discuss the identification and characterization of mycotoxins produced by the pathogenic fungus, as well as strategies for disease management. We emphasize the importance of comprehensive agricultural prevention and control methods for the sustainable management of U. virens. This knowledge will update our understanding of the interaction between U. virens and rice plants, offering a valuable perspective for those interested in U. virens.

    Table and Figures | Reference | Related Articles | Metrics | Comments0
    Molecular Mechanism of Rice Necrotic Lesion for Optimized Yield and Disease Resistance
    Hou Xinyue, Wang Yuping, Qian Qian, Ren Deyong
    Rice Science    2024, 31 (3): 285-299.   DOI: 10.1016/j.rsci.2023.12.003
    Abstract166)   HTML7)    PDF (60981KB)(615)       Save

    How to balance rice resistance and yield is an important issue in rice breeding. Plants with mutated necrotic lesion genes often have persistent broad-spectrum resistance, but this broad-spectrum resistance usually comes at the expense of yield. Currently, many necrotic lesion mutants in rice have been identified, and these genes are involved in disease resistance pathways. This review provides a detailed introduction to the characteristics, classification, and molecular mechanisms of necrotic lesion formation. Additionally, we review the molecular regulatory pathways of genes involved in rice disease resistance. Concurrently, we summarize the relationship between resistance and yield in rice using newly developed gene editing methods. We discuss a rational and precise breeding strategy to better utilize molecular design technology for breeding disease-resistant and high-yield rice varieties.

    Table and Figures | Reference | Related Articles | Metrics | Comments0
    Exploring Nutritional Compositions, Volatile Compounds, Health Benefits, Emerging Processing Technologies, and Potential Food Products of Glutinous Rice: A Review
    Maimunah Mohd Ali, Norhashila Hashim
    Rice Science    2024, 31 (3): 251-268.   DOI: 10.1016/j.rsci.2024.02.002
    Abstract217)   HTML12)    PDF (27417KB)(599)       Save

    Glutinous rice (Oryza sativa var. glutinosa) stands out as one of the most popular rice varieties globally, amidst thousands of rice cultivars. Its increasing popularity is attributed to its rich nutritional compositions and health benefits. This review aims to summarize the nutritional compositions, volatile compounds, and health benefits of glutinous rice. Further, in-depth studies are necessary to explore the utilization of glutinous rice in enhancing processing technologies and developing new food products. Glutinous rice has been shown to possess numerous health benefits, including antioxidant activity, bioactive compounds, anti-cancer properties, anti-inflammatory effects, anti-diabetic potential, and cholesterol-lowering effects. Besides its nutritional compositions, the major volatile compounds identified in glutinous rice could serve as a functional food for human consumption. Emerging processing technologies related to glutinous rice are elaborated to improve the latest developments for incorporating them into various food products.

    Table and Figures | Reference | Related Articles | Metrics | Comments0
    Gapless Genome Assembly of ZH8015 and Preliminary Multi-Omics Analysis to Investigate ZH8015’s Responses Against Brown Planthopper Infestation
    Li Dian, Duan Wenjing, Liu Qun’en, Wu Weixun, Zhan Xiaodeng, Sun Lianping, Zhang Yingxin, Cheng Shihua
    Rice Science    2024, 31 (3): 317-327.   DOI: 10.1016/j.rsci.2024.02.001
    Abstract150)   HTML15)    PDF (34293KB)(587)       Save

    Accurate genomic information is essential for advancing genetic breeding research in specific rice varieties. This study presented a gapless genome assembly of the indica rice cultivar Zhonghui 8015 (ZH8015) using PacBio HiFi, Hi-C, and ONT (Oxford Nanopore Technologies) ultra-long sequencing technologies, annotating 43 037 gene structures. Subsequently, utilizing this genome along with transcriptomic and metabolomic techniques, we explored ZH8015’s response to brown planthopper (BPH) infestation. Continuous transcriptomic sampling indicated significant changes in gene expression levels around 48 h after BPH feeding. Enrichment analysis revealed particularly significant alterations in genes related to reactive oxygen species scavenging and cell wall formation. Metabolomic results demonstrated marked increases in levels of several monosaccharides, which are components of the cell wall and dramatic changes in flavonoid contents. Omics association analysis identified differentially expressed genes associated with key metabolites, shedding light on ZH8015’s response to BPH infestation. In summary, this study constructed a reliable genome sequence resource for ZH8015, and the preliminary multi-omics results will guide future insect-resistant breeding research.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Cell Wall Fixation, Translocation, and Vacuolar Detoxification of Cadmium Contribute to Differential Grain Cadmium Accumulation in Two Rice Cultivars
    Zhu Xiaofang, Zhao Ling, Huang Jing, He Jiatong, Song Jiayin, Teng Ying, Shen Renfang
    Rice Science    2024, 31 (3): 241-244.   DOI: 10.1016/j.rsci.2023.11.010
    Abstract144)   HTML19)    PDF (26715KB)(581)       Save
    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Rice Heat Tolerance Breeding: A Comprehensive Review and Forward Gaze
    Ravindran Lalithambika Visakh, Sreekumar Anand, Sukumaran Nair Arya, Behera Sasmita, Uday Chand Jha, Rameswar Prasad Sah, Radha Beena
    Rice Science    2024, 31 (4): 375-400.   DOI: 10.1016/j.rsci.2024.02.004
    Abstract140)   HTML11)    PDF (4019KB)(575)       Save

    The yield potential of rice is seriously affected by heat stress due to climate change. Since rice is a staple food globally, it is imperative to develop heat-resistant rice varieties. Thus, a thorough understanding of the complex molecular mechanisms underlying heat tolerance and the impact of high temperatures on various critical stages of the crop is needed. Adoption of both conventional and innovative breeding strategies offers a long-term advantage over other methods, such as agronomic practices, to counter heat stress. In this review, we summarize the effects of heat stress, regulatory pathways for heat tolerance, phenotyping strategies, and various breeding methods available for developing heat-tolerant rice. We offer perspectives and knowledge to guide future research endeavors aimed at enhancing the ability of rice to withstand heat stress and ultimately benefit humanity.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Host-Induced Gene Silencing of Effector AGLIP1 Enhanced Resistance of Rice to Rhizoctonia solani AG1-IA
    Zhao Mei, Liu Xiaoxue, Wan Jun, Zhou Erxun, Shu Canwei
    Rice Science    2024, 31 (4): 463-474.   DOI: 10.1016/j.rsci.2024.04.005
    Abstract150)   HTML7)    PDF (4370KB)(564)       Save

    Rice sheath blight, caused by Rhizoctonia solani AG1-IA, is a major disease in rice-growing areas worldwide. Effectors of phytopathogenic fungi play important roles during the infection process of fungal pathogens onto their host plants. However, the molecular mechanisms by which R. solani effectors regulate rice immunity are not well understood. Through prediction, 78 candidate effector molecules were identified. Using the tobacco rattle virus-host induced gene silencing (TRV-HIGS) system, 45 RNAi constructs of effector genes were infiltrated into Nicotiana benthamiana leaves. The results revealed that eight of these constructs resulted in a significant reduction in necrosis caused by infection with the AG1-IA strain GD-118. Additionally, stable rice transformants carrying the double-stranded RNA construct for one of the effector genes, AGLIP1, were generated to further verify the function of this gene. The suppression of the AGLIP1 gene increased the resistance of both N. benthamiana and rice against GD-118, and also affected the growth rate of GD-118, indicating that AGLIP1 is a key pathogenic factor. Small RNA sequencing showed that the HIGS vectors were processed into siRNAs within the plants and then translocated to the fungi, leading to the silencing of the target genes. As a result, AGLIP1 might be an excellent candidate for HIGS, thereby enhancing crop resistance against the pathogen and contributing to the control of R. solani infection.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Anticancer Activity of Rice Callus Suspension Cultures from Aromatic Varieties and Metabolites Regulated in Treated Cancer Cell Lines
    Anuradha Kumari, Wusirika Ramakrishna
    Rice Science    2024, 31 (4): 449-462.   DOI: 10.1016/j.rsci.2024.04.002
    Abstract136)   HTML5)    PDF (5768KB)(531)       Save

    Tissue culture techniques were used to produce large amounts of bioactive compounds with medicinal potential, overcoming space and time constraints for cancer prevention. Rice callus suspension cultures (RCSC) and seed extracts prepared from aromatic rice varieties were used to evaluate the cytotoxic impact on human colon and lung cancer cell lines, as well as a normal control cell line, using Taxol as a positive control. RCSC and seed extracts from two Indian aromatic rice varieties were applied at different concentrations to treat the cancer cell lines and normal lung fibroblasts over varying time intervals. Apoptosis was assessed in 1:5 dilutions of the A549 and HT-29 cell lines treated with RCSC for 72 h, using propidium iodide staining and flow cytometry. RCSC showed a more potent cytotoxic effect than seed extracts with minimal effect on the normal cell line, in contrast to Taxol. Confocal microscopy and flow cytometry further confirmed the apoptotic effect of RCSC. Gas chromatography-mass spectrometry-based metabolic profiling identified metabolites involved in cytotoxicity and highlighted altered pathways. RCSC is proposed as an alternative source for the development of novel anticancer drugs with reduced side effects.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Changes in Metabolites and Allelopathic Effects of Non-Pigmented and Black-Pigmented Lowland Indica Rice Varieties in Phosphorus Deficiency
    Liyana Sara, Sompop Saeheng, Panupong Puttarak, Lompong Klinnawee
    Rice Science    2024, 31 (4): 434-448.   DOI: 10.1016/j.rsci.2024.02.009
    Abstract127)   HTML6)    PDF (6978KB)(492)       Save

    Phosphorus (P) levels alter the allelopathic activity of rice seedlings against lettuce seeds. In this study, we investigated the effect of P deficiency on the allelopathic potential of non-pigmented and pigmented rice varieties. Rice seedlings of the white variety Khao Dawk Mali (KDML105, non-pigmented) and the black varieties Jao Hom Nin (JHN, pigmented) and Riceberry (RB, pigmented) were cultivated under high P (HP) and low P (LP) conditions. Morphological and metabolic responses to P deficiency were investigated. P deficiency inhibited shoot growth but promoted root growth of rice seedlings in all three varieties. Moreover, P deficiency led to decreased cytosolic phosphate (Pi) and total P concentrations in both shoot and root tissues. The subsequent reduction in internal P concentration enhanced the accumulation of phenolic compounds in both shoot and root tissues of the seedlings. Subsequently, allelopathy-based inter- and intra-specific interactions were assessed using water extracts from seedlings of the three varieties grown under HP and LP conditions. These extracts were tested on seeds of lettuce, the weed Dactyloctenium aegyptium, and the same rice variety. The shoot and root extracts from P-deficient seedlings reduced the germination of all recipient plants. Specifically, the shoot extract from P-deficient KDML105 seedlings reduced the germination index (GI) of lettuce seeds to 1%, while those from P-deficient RB and JHN seedlings produced GIs of 32% and 42%, respectively. However, when rice seeds were exposed to their own LP shoot and root extracts, their GIs increased up to 4-fold, compared with the HP extracts. Additionally, the shoot extracts from P-deficient plants also stimulated the germination of D. aegyptium by about 2-3-fold, whereas the root extracts did not have this effect. Therefore, P starvation led to the accumulation and exudation of phenolics in the shoots and roots of rice seedlings, altering their allelopathic activities. To adapt to P deficiency, rice seedlings potentially release signaling chemicals to suppress nearby competing species while simultaneously promoting their own germination and growth.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Rice Grains from Slightly Saline Field Exhibited Unchanged Starch Physicochemical Properties but Enhanced Nutritional Values
    Supranee Santanoo, Wichian Sangwongchai, Maysaya Thitisaksakul, Suphatta Phothiset, Paweena Pongdontri, Noppawan Nounjan, Piyada Theerakulpisut
    Rice Science    2024, 31 (3): 343-360.   DOI: 10.1016/j.rsci.2024.02.003
    Abstract97)   HTML6)    PDF (26931KB)(460)       Save

    This study aims to investigate grain quality and nutritional values of rice (Pokkali, a salt-tolerant cultivar; RD73, a new cultivar improved from KDML105 introgressed with Saltol QTL from Pokkali, and KDML105, a moderately salt-susceptible cultivar) grown under non-saline (0.04-0.87 dS/m) and slightly saline (1.08-4.83 dS/m) field conditions. The results revealed that salinity caused significant reduction in grain size but significant increments in reducing sugar and total protein contents in the grains. Nevertheless, the amounts of starch in the grains of KDML105 and Pokkali rice genotypes were unaffected by the stress. The starch granule size distribution was also unaffected by salinity. Interestingly, only starch from Pokkali was significantly diminished in amylose content, from 19.18% to 16.99%. Accordingly, parameters relating to starch gelatinization, retrogradation, and pasting properties of KDML105 and RD73 were unaffected by salinity; only Pokkali showed a significant increase in percentage of retrogradation along with a significant reduction in gelatinization enthalpy. In the saline field, total phenolic content and antioxidant capacity in the grains of all rice cultivars tended to increase, particularly in Pokkali. On average, essential element contents in grains from the saline-treated plants showed a 33%, 32%, 32%, 22%, 20%, 11%, and 10% increase in total P, N, K, Mg, Zn, Fe, and Ca content, respectively. Interestingly, total Fe content exhibited the greatest percentage of increments in KDML105 (187%). Taken together, cultivation of rice in the slightly saline field did not alter its eating and cooking qualities, while enhanced some nutritional properties such as proteins, minerals, and secondary metabolites like phenolic compounds.

    Table and Figures | Reference | Related Articles | Metrics | Comments0
    Combined Insights from Leachate Structure and Microstructure Characteristics for Eating Quality of Convenience Rice Processed by Super-Heated and Pressurized Steam Technologies
    Mingyo Ha, Hyo-Young Jeong, Ju Hun Lee, Hyun-Jung Chung
    Rice Science    2024, 31 (4): 475-488.   DOI: 10.1016/j.rsci.2024.02.006
    Abstract91)   HTML3)    PDF (6884KB)(452)       Save

    Convenience rice has become widely popular due to its easy availability for cooking. This study investigated the starch structure and composition of leachate and the microstructure of reheated convenience rice using novel processing technologies: super-heated steaming (SHS), auto-electric cooking (AEC), and pressurized-steam cooking (PSC). Additionally, the effect of two different target water contents (58% and 63%) was also evaluated. The PSC_63% sample had the highest total solids and amylopectin amount in the leachate. The amylopectin amount in the leachate differed significantly based on the targeted water content. Morphological characterization revealed that the swelling of starch and the coated layer on the surface of rice grains were most pronounced in the PSC_63% sample due to the pressure processing. The textural hardness of the AEC_58% sample was much higher than that of the other samples. The PSC_63% sample had the highest textural adhesiveness value, which can be attributed to the highest amylopectin amount in the leachate. Sensory characterization showed that the PSC_63% sample had the highest glossiness, whiteness, moistness, and overall acceptability. The principal component analysis score plots presented substantial differences in the leachate and textural and sensory characteristics of reheated convenience rice among the different processing technologies.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Enriching Iodine and Regulating Grain Aroma, Appearance Quality, and Yield in Aromatic Rice by Foliar Application of Sodium Iodide
    Hong Weiyuan, Duan Meiyang, Wang Yifei, Chen Yongjian, Mo Zhaowen, Qi Jianying, Pan Shenggang, Tang Xiangru
    Rice Science    2024, 31 (3): 328-342.   DOI: 10.1016/j.rsci.2024.02.005
    Abstract121)   HTML10)    PDF (31496KB)(429)       Save

    Applying iodine fertilizers to cultivate iodine-rich crops for daily intake is an effective approach for iodine supplementation, especially for aromatic rice. Field experiments were conducted during the early growing seasons of 2021 and 2022 to evaluate the impacts of foliar application of iodine fertilizer on aromatic rice and to explore the optimal iodine fertilizer concentration. At the full heading stage, six different concentrations of sodium iodide solutions of 0% (CK), 0.010% (T1), 0.025% (T2), 0.050% (T3), 0.075% (T4), and 0.100% (T5) were applied to indica aromatic rice cultivars Meixiangzhan 2 and Xiangyaxiangzhan. The results showed that sodium iodide treatments significantly increased the iodine and sodium contents in both leaves and grains. Compared with the CK, the T1 and T2 treatments increased the 2-acetyl-1-pyrroline (2-AP) content in mature grains by 8.41%‒101.66% and 13.58%‒ 74.60%, respectively. Improvements in the contents of 1-pyrroline-5-carboxylic acid, proline, 1-pyrroline, and methylglyoxal, as well as the activity of proline dehydrogenase were also detected. Additionally, sodium iodide treatments remarkably decreased the chalky grain rate, chalkiness area, and chalkiness degree of aromatic rice, with the T2 treatment exhibiting a 17.79%‒47.42% decrease in chalkiness degree compared with the CK. Meanwhile, T1 and T2 treatments showed beneficial impacts on chlorophyll content, photosynthetic characteristics, and yield components, while T3, T4, and T5 treatments exhibited adverse effects on leaf and grain yields. The linear discriminant analysis revealed significant differences between treatments. The correlation analysis and piecewise structural equation modeling showed that the iodine and sodium influenced the photosynthetic characteristics and chlorophyll content of the leaves, thereby regulating the 2-AP biosynthesis and yield components, ultimately affecting the 2-AP content and yield. Overall, this study suggests that foliar application of 0.025% sodium iodide is an effective method to enrich the iodine content in rice grains, improve the grain aroma and appearance quality of aromatic rice, without detrimental effects on grain yield.

    Table and Figures | Reference | Supplementary Material | Related Articles | Metrics | Comments0
    Genome-Wide Association Study of Cooked Rice Textural Attributes and Starch Physicochemical Properties in indica Rice
    Deng Bowen, Zhang Yanni, Zhang Fan, Wang Wensheng, Xu Jianlong, Zhang Yu, Bao Jinsong
    Rice Science    2024, 31 (3): 300-316.   DOI: 10.1016/j.rsci.2024.02.008
    Abstract160)   HTML18)    PDF (32339KB)(414)       Save

    Rice cooking and eating qualities (CEQ) are mainly determined by cooked rice textural parameters and starch physicochemical properties. However, the genetic bases of grain texture and starch properties in rice have not been fully understood. We conducted a genome-wide association study for apparent amylose content (AAC), starch pasting viscosities, and cooked rice textural parameters using 279 indica rice accessions from the 3 000 Rice Genome Project. We identified 26 QTLs in the whole population and detected single nucleotide polymorphisms (SNPs) with the lowest P-value at the Waxy (Wx) locus for all traits except pasting temperature and cohesiveness. Additionally, we detected significant SNPs at the SUBSTANDARD STARCH GRAIN6 (SSG6) locus for AAC, setback (SB), hardness, adhesiveness, chewiness (CHEW), gumminess (GUM), and resilience. We subsequently divided the population using a SNP adjacent to the Waxy locus, and identified 23 QTLs and 12 QTLs in two sub-panels, WxT and WxA, respectively. In these sub-panels, SSG6 was also identified to be associated with pasting parameters, including peak viscosity, hot paste viscosity, cold paste viscosity, and consistency viscosity. Furthermore, a candidate gene encoding monosaccharide transporter 5 (OsMST5) was identified to be associated with AAC, breakdown, SB, CHEW, and GUM. In total, 39 QTLs were co-localized with known genes or previously reported QTLs. These identified genes and QTLs provide valuable information for genetic manipulation to improve rice CEQ.

    Table and Figures | Reference | Related Articles | Metrics | Comments0