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    Rice Husk at a Glance: From Agro-Industrial to Modern Applications
    Masoumeh Kordi, Naser Farrokhi, Martin I. Pech-Canul, Asadollah Ahmadikhah
    Rice Science    2024, 31 (1): 14-32.   DOI: 10.1016/j.rsci.2023.08.005
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    Excessive waste production has led to the concept of a circular bioeconomy to deliver valuable by-products and improve environmental sustainability. The annual worldwide rice production accounts for more than 750 million tons of grain and 150 million tons of husk. Rice husk (RH) contains valuable biomaterials with extensive applications in various fields. The proportions of each component depend primarily on rice genotype, soil chemistry, and climatic conditions. RH and its derivatives, including ash, biochar, hydrochar, and activated carbon have been placed foreground of applications in agriculture and other industries. While the investigation on RH’s compositions, microstructures, and by-products has been done copiously, owing to its unique features, it is still an open-ended area with enormous scope for innovation, research, and technology. Here, we reviewed the latest applications of RH and its derivatives, including fuel and other energy resources, construction materials, pharmacy, medicine, and nanobiotechnology to keep this versatile biomaterial in the spotlight.

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    Adoption of Improved Rice Varieties in the Global South: A Review
    Julia Checco, Fathin Ayuni Azizan, Jaquie Mitchell, Ammar Abdul Aziz
    Rice Science    2023, 30 (3): 186-206.   DOI: 10.1016/j.rsci.2023.03.004
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    Improved rice varieties (IRVs) play a significant role in establishing food security and improving livelihood in the Global South since its introduction in the 1960s. However, the adoption of new IRVs has remained relatively low. This low adoption poses a challenge to rice-producing and consuming countries as they are increasingly threatened by production shortages, malnutrition, and poor rice quality. Many empirical studies have attempted to identify the determinants influencing the adoption of IRVs by distinguishing the characteristics between adopters and non-adopters. This review showed a consensus on the important determinants influencing the adoption of IRVs in the Global South. Findings synthesized from 99 studies suggested that variables (farm size, education, information access and farm location) examined extensively are not necessarily the most important determinants of adoption when undertaking a weighted analysis. Terrain, source of seed and technology-related attributes (perceived yield, maturity, ease of use, marketability and technical efficiency) are more important determinants of adoption, with determinants changing according to adoption type (probability or intensity of adoption), variety type and region. The recommendations for future adoption studies include: incorporating more technology-specific variables, increasing research for overlooked regions and variety types, shifting away from predominant static analysis by capturing the dynamics of the adoption process, and considering the potential biases in analyses. This review will facilitate the development of targeted interventions and policies that promote IRV adoption in the Global South.

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    Potential Benefits of Bioactive Compounds of Traditional Rice Grown in South and Southeast Asia: A Review
    Md. Forshed Dewan, Md. Ahiduzzaman, Md. Nahidul Islam, Habibul Bari Shozib
    Rice Science    2023, 30 (6): 537-551.   DOI: 10.1016/j.rsci.2023.07.002
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    Traditional rice varieties have been widely cultivated and popularly consumed by Asian people for a very long time and have recently garnered increased consumer concern. Traditional or indigenous rice varieties are known to be rich in a wide range of bioactive compounds, particularly phenolic compounds, flavonoids, tannins, anthocyanins, proanthocyanidins, phytic acids, and γ-oryzanol. We have identified 32 phenolic acids, including hydroxycinnamic acid derivatives, and 7 different flavonoids in rice varieties. These bioactive compounds have unique physiological effects on human health. Additionally, rice grains exhibit nutraceutical potential for antidiabetic, antiarthritic, anti-inflammatory, antibacterial, and antitumor activities. In this review, we critically analyzed the bioactive components of traditional rice and their nutraceutical potential in protecting against harmful microbial activities. To ensure that future generations have access to these beneficial substances, it is crucial to preserve traditional rice varieties.

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    Genome-Wide Dissection of Quan 9311A Breeding Process and Application Advantages
    Li Qianlong, Feng Qi, Wang Heqin, Kang Yunhai, Zhang Conghe, Du Ming, Zhang Yunhu, Wang Hui, Chen Jinjie, Han Bin, Fang Yu, Wang Ahong
    Rice Science    2023, 30 (6): 552-565.   DOI: 10.1016/j.rsci.2023.06.004
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    Germplasm resource innovation is a crucial factor for cultivar development, particularly within the context of hybrid rice breeding based on the three-line system. Quan 9311A, a cytoplasmic male sterile (CMS) line, has been successfully cultivated using rice restoration materials and extensively employed as a female parent in hybrid breeding program in China. This line was developed by crossing the CMS line Zhong 9A with a two-line restorer line 93-11, with the intention of eliminating the restoring ability of 93-11 while retaining the sterility gene WA352c from Zhong 9A. Quan 9311A effectively amalgamates the most favorable agronomic traits from both parental lines. In this study, the relationship between phenotypic characteristics and the known functional genes of Quan 9311A were analyzed using the rice genome navigation technology based on whole-genome sequencing. The findings revealed that Quan 9311A harbors multiple superior alleles from both 93-11 and Zhong 9A, providing exceptional agronomic traits that are unavailable in earlier CMS lines. Despite the removal of the fertility restorer gene Rf3 from 93-11, numerous chromosomal segments from 93-11 persist in the Quan 9311A genome. Furthermore, the hybrid rice Quanyousimiao (QYSM) and the restorer line Wushansimiao (WSSM) were used as examples to illustrate the important role of Quan 9311A as the female parent in heterosis. It was found that QYSM carries a great number of superior alleles, which accounts for its high grain yield and wide adaptability. These insights not only advanced the utilization of hybrid rice pairing groups but also provided guidance for future breeding endeavors. The study introduced innovative concepts to further integrate genomics with traditional breeding techniques. Ultimately, Quan 9311A signified a significant milestone in rice breeding technology, opening up novel avenues for hybrid rice development.

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    Defensive Role of Plant Hormones in Advancing Abiotic Stress-Resistant Rice Plants
    M. Iqbal R. Khan, Sarika Kumari, Faroza Nazir, Risheek Rahul Khanna, Ravi Gupta, Himanshu Chhillar
    Rice Science    2023, 30 (1): 15-35.   DOI: 10.1016/j.rsci.2022.08.002
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    Consistent climatic perturbations have increased global environmental concerns, especially the impacts of abiotic stresses on crop productivity. Rice is a staple food crop for the majority of the world’s population. Abiotic stresses, including salt, drought, heat, cold and heavy metals, are potential inhibitors of rice growth and yield. Abiotic stresses elicit various acclimation responses that facilitate in stress mitigation. Plant hormones play an important role in mediating the growth and development of rice plants under optimal and stressful environments by activating a multitude of signalling cascades to elicit the rice plant’s adaptive responses. The current review describes the role of plant hormone-mediated abiotic stress tolerance in rice, potential crosstalk between plant hormones involved in rice abiotic stress tolerance and significant advancements in biotechnological initiatives including genetic engineering approach to provide a step forward in making rice resistance to abiotic stress.

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    Rice Storage Proteins: Focus on Composition, Distribution, Genetic Improvement and Effects on Rice Quality
    Long Xinkang, Guan Chunmin, Wang Lin, Jia Liting, Fu Xiangjin, Lin Qinlu, Huang Zhengyu, Liu Chun
    Rice Science    2023, 30 (3): 207-221.   DOI: 10.1016/j.rsci.2023.03.005
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    Rice storage proteins (RSPs) are plant proteins with high nutritional quality. As the second largest type of storage substance in rice, it is the main source of protein intake for people who consume rice as a staple food. The content and type of RSPs affect the appearance, processing quality and eating quality of rice. These effects involve the distribution of RSPs in rice grains as well as the interactions of RSPs with other components such as starch in rice grains. In the past two decades, some progress has been made in the genetic improvement of RSPs. However, the determination mechanism of protein content and composition in rice is still unclear, and the mechanism of the effect of RSPs on rice quality has not been elucidated. In this review, the composition, biosynthesis and distribution of RSPs, and quantitative trait loci mapping and cloning of RSP genes are summarized, the research progress of the influence of RSPs and their components on rice quality are reviewed, and the research directions in the future are proposed.

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    Exploring Nutritional Compositions, Volatile Compounds, Health Benefits, Emerging Processing Technologies, and Potential Food Products of Glutinous Rice: A Review
    Maimunah Mohd Ali, Norhashila Hashim
    Rice Science    2024, 31 (3): 251-268.   DOI: 10.1016/j.rsci.2024.02.002
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    Glutinous rice (Oryza sativa var. glutinosa) stands out as one of the most popular rice varieties globally, amidst thousands of rice cultivars. Its increasing popularity is attributed to its rich nutritional compositions and health benefits. This review aims to summarize the nutritional compositions, volatile compounds, and health benefits of glutinous rice. Further, in-depth studies are necessary to explore the utilization of glutinous rice in enhancing processing technologies and developing new food products. Glutinous rice has been shown to possess numerous health benefits, including antioxidant activity, bioactive compounds, anti-cancer properties, anti-inflammatory effects, anti-diabetic potential, and cholesterol-lowering effects. Besides its nutritional compositions, the major volatile compounds identified in glutinous rice could serve as a functional food for human consumption. Emerging processing technologies related to glutinous rice are elaborated to improve the latest developments for incorporating them into various food products.

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    Development and Application of Prime Editing in Plants
    Liu Tingting, Zou Jinpeng, Yang Xi, Wang Kejian, Rao Yuchun, Wang Chun
    Rice Science    2023, 30 (6): 509-522.   DOI: 10.1016/j.rsci.2023.07.005
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    Clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated protein (Cas)-mediated genome editing has greatly accelerated progress in plant genetic research and agricultural breeding by enabling targeted genomic modifications. Moreover, the prime editing system, derived from the CRISPR/Cas system, has opened the door for even more precise genome editing. Prime editing has the capability to facilitate all 12 types of base-to-base conversions, as well as desired insertions or deletions of fragments, without inducing double-strand breaks and requiring donor DNA templet. In a short time, prime editing has been rapidly verified as functional in various plants, and can be used in plant genome functional analysis as well as precision breeding of crops. In this review, we summarize the emergence and development of prime editing, highlight recent advances in improving its efficiency in plants, introduce the current applications of prime editing in plants, and look forward to future prospects for utilizing prime editing in genetic improvement and precision molecular breeding.

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    LHD3 Encoding a J-Domain Protein Controls Heading Date in Rice
    Liu Qiao, Qiu Linlin, Hua Yangguang, Li Jing, Pang Bo, Zhai Yufeng, Wang Dekai
    Rice Science    2023, 30 (5): 437-448.   DOI: 10.1016/j.rsci.2023.03.015
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    Heading date is one of the most important agronomic traits of rice, which critically affects rice ecogeographical adaptation, yield and quality. In this study, a late heading date 3 (lhd3) mutant was screened from the 60Co-γ irradiation mutant library. The lhd3 delayed heading date in rice under both short day and long day conditions. Map-based cloning combined with Mutmap strategy was adopted to isolate the causal LHD3 gene. The LHD3 gene encodes a DNA_J domain protein, which was ubiquitously expressed in various plant organs, and dominant expressed in stems and leaves. Subcellular localization analysis showed that LHD3 was localized to nucleus, indicating that LHD3 may interact with other elements to regulate the expression of flowering genes. The transcriptions of the heading activators Ehd1, Hd3a and RFT1 significantly decreased in the lhd3 mutant, suggesting that LHD3 may control the heading date through the Ehd1-Hd3a/RFT1 photoperiodic flowering pathway. The variation and haplotype analyses of the genomic region of LHD3 showed that there were 7 haplotypes in the LHD3 region from 4 702 accessions. The haplotypes of LHD3 can be divided into two classes: class a and class b, and the heading dates of these two classes were significantly different. Further study showed that two single nucleotide polymorphisms (SNPs), SNP10 (G2100C) in Hap II and SNP3 (C861T) in Hap VII, may be the functional sites causing early and late heading in accessions. Nucleotide diversity analysis showed LHD3 had been selected in the indica population, rather than in the japonica population. Therefore, the present study sheds light on the regulation of LHD3 on heading date in rice and suggests that LHD3 is a novel promising new target for rice molecular design and breeding improvement.

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    Stay-Green Panicle Branches Improve Processing Quality of Elite Rice Cultivars
    Chen Yibo, Zhao Lei, Wang Chongrong, Li Hong, Huang Daoqiang, Wang Zhidong, Zhou Degui, Pan Yangyang, Gong Rong, Zhou Shaochuan
    Rice Science    2023, 30 (1): 11-14.   DOI: 10.1016/j.rsci.2022.08.001
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    Effect of GW8 Gene Editing on Appearance Quality of Erect-Panicle Type (dep1) Japonica Rice
    Mao Ting, Chen Hongfa, Li Xin, Liu Yan, Zhong Shuncheng, Wang Shiyu, Zhao Yizhou, Zhang Zhan, Ni Shanjun, Huang He, Li Xu, Hu Shikai
    Rice Science    2023, 30 (5): 359-363.   DOI: 10.1016/j.rsci.2022.12.002
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    Rice Heat Tolerance Breeding: A Comprehensive Review and Forward Gaze
    Ravindran Lalithambika Visakh, Sreekumar Anand, Sukumaran Nair Arya, Behera Sasmita, Uday Chand Jha, Rameswar Prasad Sah, Radha Beena
    Rice Science    2024, 31 (4): 375-400.   DOI: 10.1016/j.rsci.2024.02.004
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    The yield potential of rice is seriously affected by heat stress due to climate change. Since rice is a staple food globally, it is imperative to develop heat-resistant rice varieties. Thus, a thorough understanding of the complex molecular mechanisms underlying heat tolerance and the impact of high temperatures on various critical stages of the crop is needed. Adoption of both conventional and innovative breeding strategies offers a long-term advantage over other methods, such as agronomic practices, to counter heat stress. In this review, we summarize the effects of heat stress, regulatory pathways for heat tolerance, phenotyping strategies, and various breeding methods available for developing heat-tolerant rice. We offer perspectives and knowledge to guide future research endeavors aimed at enhancing the ability of rice to withstand heat stress and ultimately benefit humanity.

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    Novel Deletion in Exon 7 of Betaine Aldehyde Dehydrogenase 2 (BADH2)
    Van Quoc Giang, Huynh Ky, Nguyen Chau Thanh Tung, Nguyen Loc Hien, Nguyen van Manh, Nguyen Nhut Thanh, Vo Cong Thanh, Swee Keong Yeap
    Rice Science    2023, 30 (2): 104-112.   DOI: 10.1016/j.rsci.2023.01.003
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    The fragrance of rice is one of the premium characteristics that breeders want to include in rice varieties due to the higher market value. Nucleotide deletions in exons 2 (7 bp) and 7 (8 bp) of Betaine Aldehyde Dehydrogenase 2 (BADH2) are associated with fragrance in rice. In this study, a new 13 bp deletion in exon 7 of the BADH2 gene was discovered in the Nang Thom Cho Dao (NTCD) variety, and the mutation has been closely related to the genetic background of indica subspecies through the Bayesian phylogenetic approach and haplotype network analysis of the 3 000 Rice Genomes Project. In addition, a set of functional markers (EX07-13F, EX07-13RN, and EX07-13RM) identified the 13 bp deletion only within NTCD (no amplified band) compared with both non-aromatic and other aromatic rice varieties (110 bp band). The deletion of 13 bases instead of 8 bases in exon 7 of BADH2 caused a premature stop codon, which down-regulated the expression of the BADH2 transcript while associated with up-regulation of OsP5CS and the high amount of 2-acetyl-1-pyrroline. It is potential to use the deletion in exon 7 of the BADH2 gene as a novel marker for adulteration and breeding of fragrant rice varieties, particularly for NTCD.

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    Iron Toxicity Tolerance of Rice Genotypes in Relation to Growth, Yield and Physiochemical Characters
    Sheikh Faruk Ahmed, Hayat Ullah, May Zun Aung, Rujira Tisarum, Suriyan Cha-Um, Avishek Datta
    Rice Science    2023, 30 (4): 321-334.   DOI: 10.1016/j.rsci.2023.02.002
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    Iron (Fe) toxicity, generated from excess reduced ferrous Fe (Fe2+) ion formation within the soil under submerged condition, is a potent environmental stress that limits lowland rice production. Total 11 diverse Thai rice genotypes, including a recognized tolerant genotype Azucena and a susceptible genotype IR64, were evaluated against 5 Fe2+ levels [0 (control), 150, 300, 600 and 900 mg/L] to screen the tested genotypes for their Fe-toxicity tolerance and to classify them as a sensitive/tolerant category. The evaluation was conducted by a germination study, followed by a polyhouse study on growth, yield and physiochemical performances. Results showed significant variations in Fe2+-tolerance across genotypes. Increasing Fe2+ level beyond 300 mg/L was detrimental for germination and growth of all the tested genotypes, although germination responses were negatively affected at Fe2+ ≥ 300 mg/L. Physiochemical responses in the form of leaf greenness, net photosynthetic rate, membrane stability index and Fe contents in leaf and root were the most representative of Fe2+-toxicity-mediated impairments on overall growth and yield. Difference in physiochemical responses was effectively correlated with the contrasting ability of the genotypes on lowering excess Fe2+ in tissues. Analysis of average tolerance and stress tolerance index unveiled that the genotypes RD85 and RD31 were the closest to the tolerant check Azucena and the sensitive check IR64, respectively. The unweighted pair group method with arithmetic means clustering revealed three major clusters, with cluster II (four genotypes) being Fe2+ tolerant and cluster I (four genotypes) being Fe2+ sensitive. Principal component (PC) analysis and genotype by trait-biplot analysis showed that the first two components explained 90.5% of the total variation, with PC1 accounting for 56.6% and PC2 for 33.9% of the total variation. The identified tolerant rice genotypes show potentials for cultivation in Fe2+-toxic lowlands for increased productivity. The findings contribute to the present understanding on Fe2+-toxicity response and provide a basis for future genotype selection or rice crop improvement programs against Fe2+-toxicity.

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    Rational Design of Grain Size to Improve Rice Yield and Quality
    Tao Yajun, Wang Jun, Xu Yang, Wang Fangquan, Li Wenqi, Jiang Yanjie, Chen Zhihui, Fan Fangjun, Zhu Jianping, Li Xia, Yang Jie
    Rice Science    2023, 30 (1): 1-5.   DOI: 10.1016/j.rsci.2022.04.003
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    Grain Shape Genes: Shaping the Future of Rice Breeding
    Lu Xuedan, Li Fan, Xiao Yunhua, Wang Feng, Zhang Guilian, Deng Huabing, Tang Wenbang
    Rice Science    2023, 30 (5): 379-404.   DOI: 10.1016/j.rsci.2023.03.014
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    The main goals of rice breeding nowadays include increasing yield, improving grain quality, and promoting complete mechanized production to save labor costs. Rice grain shape, specified by three dimensions, including grain length, width and thickness, has a more precise meaning than grain size, contributing to grain appearance quality as well as grain weight and thus yield. Furthermore, the divergence of grain shape characters could be utilized in mechanical seed sorting in hybrid rice breeding systems, which has been succeeded in utilizing heterosis to achieve substantial increase in rice yield in the past decades. Several signaling pathways that regulate rice grain shape have been elucidated, including G protein signaling, ubiquitination-related pathway, mitogen-activated protein kinase signaling, phytohormone biosynthesis and signaling, microRNA process, and some other transcriptional regulatory pathways and regulators. This review summarized the recent progress on molecular mechanisms underlying rice grain shape determination and the potential of major genes in future breeding applications.

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    Effects of Root Growth of Deep and Shallow Rooting Rice Cultivars in Compacted Paddy Soils on Subsequent Rice Growth
    Md. Dhin Islam, Adam H. Price, Paul D. Hallett
    Rice Science    2023, 30 (5): 459-472.   DOI: 10.1016/j.rsci.2023.03.017
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    Rice is often grown as multiple seasons in one year, alternating between flooded and upland systems. A major constraint, introduced from the flooded system, is a plough pan that may decrease rooting depth and productivity of follow-on upland rice. Roots penetrating the plough pan under flooded rice system can leave a legacy of weaker root growth pathways. Deeper rooting rice cultivars could have a bigger impact, but no direct evidence is available. To explore whether a deep rather than a shallow rooting rice cultivar grown in a flooded cropping cycle benefited deeper root growth of follow-on rice in an upland, reduced tillage cropping cycle, a simulated flooded paddy in greenhouse was planted with deep (Black Gora) and shallow (IR64) rooting cultivars and a plant-free control. Artificial plough pans were made in between the topsoil and subsoil to form different treatments with no plough pan (0.35 MPa), soft plough pan (1.03 MPa) and hard plough pan (1.70 MPa). After harvest of this ‘first season’ rice, the soil was drained and undisturbed to simulate zero-tillage upland and planted rice cultivar BRRI Dhan 28. The overall root length density (RLD), root surface area, the numbers of root tips and branching of BRRI Dhan 28 did not vary between plough pan and no plough pan treatments. Compared with the shallow rooting rice genotype, the deep rooting rice genotype as ‘first season’ crop produced 19% greater RLD, 34% greater surface area and 29% more branching of BRRI Dhan 28 in the subsoil. In the topsoil, however, BRRI Dhan 28 had 28% greater RLD, 35% greater surface area and 43% more branching for the shallow rather than deep rooting genotype planted in the ‘first season’. The results suggested that rice cultivar selection for a paddy cycle affects root growth of a follow-on rice crop grown under no-till, with benefits to subsoil access from deep rooting cultivars and topsoil proliferation for shallow rooting cultivars.

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    Diversity of Arbuscular Mycorrhizal Fungi Associated with Six Rice Cultivars in Italian Agricultural Ecosystem Managed with Alternate Wetting and Drying
    Veronica Volpe, Franco Magurno, Paola Bonfante, Stefano Ghignone, Erica Lumini
    Rice Science    2023, 30 (4): 348-358.   DOI: 10.1016/j.rsci.2023.02.003
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    Alternate wetting and drying (AWD) system, in which water has been reduced by approximately 35% with an increased occurrence of beneficial arbuscular mycorrhizal (AM) symbiosis and no negative impact on rice yield, was proposed to utilize water and nutrients more sustainable. In this study, we selected six rice cultivars (Centauro, Loto, Selenio, Vialone nano, JSendra and Puntal) grown under AWD conditions, and investigated their responsiveness to AM colonization and how they select diverse AM taxa. In order to investigate root-associated AM fungus communities, molecular cloning-Sanger sequencing on small subunit rDNA data were obtained from five out of the six rice cultivars and compared with Next Generation Sequencing (NGS) data, which were previously obtained in Vialone nano. The results showed that all the cultivars were responsive to AM colonization with the development of AM symbiotic structures, even if with differences in the colonization and arbuscule abundance in the root systems. We identified 16 virtual taxa (VT) in the soil compartment and 7 VT in the root apparatus. We emphasized that the NGS analysis gives additional value to the results thanks to a more in-depth reading of the less represented AM fungus taxa.

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    Recent Advances to Enhance Nutritional Quality of Rice
    Sundus Zafar, Xu Jianlong
    Rice Science    2023, 30 (6): 523-536.   DOI: 10.1016/j.rsci.2023.05.004
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    The nutritional quality of rice is a major concern, along with the need to enhance productivity to feed the continuously growing population. Therefore, there is a requirement to breed high-yielding rice varieties with improved nutritional quality that can help combat malnutrition, a global health issue. Undoubtedly, breeding approaches have played a significant role in increasing rice yield while enhancing its nutritional content. In addition to traditional breeding techniques, other recent approaches, such as genetic engineering, gene editing, omics methods, and agronomic practices, must also be employed to meet the nutritional needs of the current population. In this review, we offered detailed information on the development of nutritionally improved rice varieties through the enhancement of protein content, micro- and macronutrients, vitamins, and oil quality using genetic engineering approaches. We also identified QTLs associated with amino acids, proteins, and micronutrients in rice. Furthermore, omics approaches provide a range of tools and techniques for effectively exploring resources and understanding the molecular mechanisms involved in trait development. Omics branches, including transcriptomics, proteomics, ionomics, and metabolomics, are efficiently utilized for improving rice nutrition. Therefore, by utilizing the information obtained from these techniques and incorporating all of these recent approaches, we can effectively modify the rice genome, directly enhancing the nutritional value of rice varieties. This will help address the challenges of malnutrition in the years to come.

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    Efficient Improvement of Nutritional Content in Rice Grains by Precise Base Editing of OsROS1
    Xu Yang, Wang Fangquan, Li Wenqi, Wang Jun, Tao Yajun, Fan Fangjun, Chen Zhihui, Jiang Yanjie, Zhu Jianping, Li Xia, Zhu Qianhao, Yang Jie
    Rice Science    2023, 30 (6): 499-503.   DOI: 10.1016/j.rsci.2023.06.002
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